Analysis of interatomic Contacts of Structural Units in PDB entry:
8YXT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YXT entry

There is 1 chain in PDB entry 8YXT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 18TRP 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8YXT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 43Right-handed alpha
Helix 2
AA2
A
61 70Right-handed alpha
Helix 3
AA3
A
76 81Right-handed 310
Helix 4
AA4
A
107 116Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
123 143Right-handed alpha
Helix 7
AA7
A
148 152Right-handed alpha
Helix 8
AA8
A
153 166Right-handed alpha
Helix 9
AA9
A
168 170Right-handed 310
Helix 10
AB1
A
171 183Right-handed alpha
Helix 11
AB2
A
192 209Right-handed alpha
Helix 12
AB3
A
216 226Right-handed alpha
Helix 13
AB4
A
236 269Right-handed alpha
Helix 14
AB5
A
269 279Right-handed alpha
Helix 15
AB6
A
282 294Right-handed alpha
Helix 16
AB7
A
325 331Right-handed alpha
Helix 17
AB8
A
356 360Right-handed 310
Helix 18
AB9
A
363 382Right-handed alpha
Helix 19
AC1
A
390 394Right-handed 310
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There are 3 sheets in PDB entry 8YXT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
321 324parallel
Strand 4
A
301 305anti-parallel
Strand 5
A
74 75anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
409 411anti-parallel
Strand 3
A
386 387anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
314 316anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il