Analysis of interatomic Contacts of Structural Units in PDB entry:
8YY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YY1 entry

There are 14 chains in PDB entry 8YY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
 ASP 3CYS 322
N
 MET 1ARG 649
O
 GLY 8LEU 80
P
 GLY 8LEU 80
Q
 GLY 8LEU 80
R
 GLY 8LEU 80
S
 GLY 8LEU 80
T
 GLY 8LEU 80
U
 GLY 8LEU 80
V
 GLY 8LEU 80
W
 GLY 8LEU 80
X
 GLY 8LEU 80
Y
 GLY 8LEU 80
Z
 GLY 8LEU 80
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 8YY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
M
6 18Right-handed alpha
Helix 2
AA2
M
21 28Right-handed alpha
Helix 3
AA3
M
33 42Right-handed alpha
Helix 4
AA4
M
43 48Right-handed 310
Helix 5
AA5
M
53 69Right-handed alpha
Helix 6
AA6
M
80 85Right-handed alpha
Helix 7
AA7
M
89 106Right-handed alpha
Helix 8
AA8
M
120 130Right-handed alpha
Helix 9
AA9
M
132 140Right-handed alpha
Helix 10
AB1
M
146 158Right-handed alpha
Helix 11
AB2
M
160 182Right-handed alpha
Helix 12
AB3
M
185 207Right-handed alpha
Helix 13
AB4
M
213 218Right-handed alpha
Helix 14
AB5
M
226 235Right-handed alpha
Helix 15
AB6
M
238 244Right-handed alpha
Helix 16
AB7
M
258 274Right-handed alpha
Helix 17
AB8
M
283 309Right-handed alpha
Helix 18
AB9
M
312 320Right-handed 310
Helix 19
AC1
N
16 27Right-handed alpha
Helix 20
AC2
N
46 71Right-handed alpha
Helix 21
AC3
N
83 129Right-handed alpha
Helix 22
AC4
N
149 154Right-handed alpha
Helix 23
AC5
N
172 176Right-handed 310
Helix 24
AC6
N
187 197Right-handed alpha
Helix 25
AC7
N
205 211Right-handed alpha
Helix 26
AC8
N
212 269Right-handed alpha
Helix 27
AC9
N
283 285Right-handed 310
Helix 28
AD1
N
286 294Right-handed alpha
Helix 29
AD2
N
328 330Right-handed 310
Helix 30
AD3
N
331 336Right-handed alpha
Helix 31
AD4
N
347 349Right-handed 310
Helix 32
AD5
N
350 363Right-handed alpha
Helix 33
AD6
N
365 386Right-handed alpha
Helix 34
AD7
N
399 424Right-handed alpha
Helix 35
AD8
N
452 454Right-handed 310
Helix 36
AD9
N
455 489Right-handed alpha
Helix 37
AE1
N
491 516Right-handed alpha
Helix 38
AE2
N
521 542Right-handed alpha
Helix 39
AE3
N
547 561Right-handed alpha
Helix 40
AE4
N
561 587Right-handed alpha
Helix 41
AE5
N
593 627Right-handed alpha
Helix 42
AE6
N
627 633Right-handed alpha
Helix 43
AE7
O
9 48Right-handed alpha
Helix 44
AE8
O
49 53Right-handed 310
Helix 45
AE9
O
54 61Right-handed alpha
Helix 46
AF1
O
62 80Right-handed alpha
Helix 47
AF2
P
9 48Right-handed alpha
Helix 48
AF3
P
51 61Right-handed alpha
Helix 49
AF4
P
63 79Right-handed alpha
Helix 50
AF5
Q
9 48Right-handed alpha
Helix 51
AF6
Q
50 60Right-handed alpha
Helix 52
AF7
Q
61 63Right-handed 310
Helix 53
AF8
Q
64 79Right-handed alpha
Helix 54
AF9
R
9 48Right-handed alpha
Helix 55
AG1
R
51 61Right-handed alpha
Helix 56
AG2
R
63 80Right-handed alpha
Helix 57
AG3
S
11 48Right-handed alpha
Helix 58
AG4
S
51 61Right-handed alpha
Helix 59
AG5
S
62 80Right-handed alpha
Helix 60
AG6
T
9 48Right-handed alpha
Helix 61
AG7
T
48 60Right-handed alpha
Helix 62
AG8
T
62 80Right-handed alpha
Helix 63
AG9
U
11 48Right-handed alpha
Helix 64
AH1
U
51 60Right-handed alpha
Helix 65
AH2
U
62 80Right-handed alpha
Helix 66
AH3
V
10 48Right-handed alpha
Helix 67
AH4
V
51 60Right-handed alpha
Helix 68
AH5
V
62 80Right-handed alpha
Helix 69
AH6
W
11 48Right-handed alpha
Helix 70
AH7
W
51 61Right-handed alpha
Helix 71
AH8
W
63 80Right-handed alpha
Helix 72
AH9
X
10 46Right-handed alpha
Helix 73
AI1
X
48 50Right-handed 310
Helix 74
AI2
X
51 61Right-handed alpha
Helix 75
AI3
X
62 80Right-handed alpha
Helix 76
AI4
Y
9 48Right-handed alpha
Helix 77
AI5
Y
55 60Right-handed alpha
Helix 78
AI6
Y
62 79Right-handed alpha
Helix 79
AI7
Z
11 48Right-handed alpha
Helix 80
AI8
Z
51 60Right-handed alpha
Helix 81
AI9
Z
62 80Right-handed alpha
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There are 4 sheets in PDB entry 8YY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
6 7first strand
Strand 2
N
306 307anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
10 13first strand
Strand 2
N
275 278anti-parallel
Strand 3
N
270 271anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
31 32first strand
Strand 2
N
280 281anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
138 141first strand
Strand 2
N
180 183anti-parallel
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