Analysis of interatomic Contacts of Structural Units in PDB entry:
8YY3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YY3 entry

There are 4 chains in PDB entry 8YY3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 437
B	MET 1	ASP 427
C	ALA 295	CYS 670
D	LEU 296	LYS 671

There are 68 helices in PDB entry 8YY3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	28	Right-handed alpha
Helix 2	AA2	A	48	51	Right-handed 310
Helix 3	AA3	A	72	81	Right-handed alpha
Helix 4	AA4	A	102	109	Right-handed alpha
Helix 5	AA5	A	110	113	Right-handed 310
Helix 6	AA6	A	114	129	Right-handed alpha
Helix 7	AA7	A	143	161	Right-handed alpha
Helix 8	AA8	A	182	195	Right-handed alpha
Helix 9	AA9	A	196	198	Right-handed 310
Helix 10	AB1	A	206	216	Right-handed alpha
Helix 11	AB2	A	223	244	Right-handed alpha
Helix 12	AB3	A	251	260	Right-handed alpha
Helix 13	AB4	A	277	282	Right-handed alpha
Helix 14	AB5	A	287	295	Right-handed alpha
Helix 15	AB6	A	296	301	Right-handed 310
Helix 16	AB7	A	306	310	Right-handed 310
Helix 17	AB8	A	324	338	Right-handed alpha
Helix 18	AB9	A	384	401	Right-handed alpha
Helix 19	AC1	A	404	410	Right-handed alpha
Helix 20	AC2	A	414	437	Right-handed alpha
Helix 21	AC3	B	9	29	Right-handed alpha
Helix 22	AC4	B	40	46	Right-handed alpha
Helix 23	AC5	B	47	49	Right-handed 310
Helix 24	AC6	B	70	79	Right-handed alpha
Helix 25	AC7	B	86	88	Right-handed 310
Helix 26	AC8	B	100	107	Right-handed alpha
Helix 27	AC9	B	107	126	Right-handed alpha
Helix 28	AD1	B	142	159	Right-handed alpha
Helix 29	AD2	B	180	196	Right-handed alpha
Helix 30	AD3	B	203	214	Right-handed alpha
Helix 31	AD4	B	221	242	Right-handed alpha
Helix 32	AD5	B	249	258	Right-handed alpha
Helix 33	AD6	B	285	294	Right-handed alpha
Helix 34	AD7	B	295	299	Right-handed 310
Helix 35	AD8	B	304	308	Right-handed 310
Helix 36	AD9	B	322	337	Right-handed alpha
Helix 37	AE1	B	338	341	Right-handed 310
Helix 38	AE2	B	373	388	Right-handed alpha
Helix 39	AE3	B	394	400	Right-handed alpha
Helix 40	AE4	B	404	426	Right-handed alpha
Helix 41	AE5	C	296	347	Right-handed alpha
Helix 42	AE6	C	359	365	Right-handed alpha
Helix 43	AE7	C	384	392	Right-handed alpha
Helix 44	AE8	C	408	424	Right-handed alpha
Helix 45	AE9	C	439	445	Right-handed alpha
Helix 46	AF1	C	452	469	Right-handed alpha
Helix 47	AF2	C	470	472	Right-handed 310
Helix 48	AF3	C	524	539	Right-handed alpha
Helix 49	AF4	C	592	615	Right-handed alpha
Helix 50	AF5	C	621	624	Right-handed 310
Helix 51	AF6	C	625	631	Right-handed alpha
Helix 52	AF7	C	631	636	Right-handed alpha
Helix 53	AF8	C	650	652	Right-handed 310
Helix 54	AF9	C	653	670	Right-handed alpha
Helix 55	AG1	D	297	347	Right-handed alpha
Helix 56	AG2	D	359	363	Right-handed 310
Helix 57	AG3	D	384	389	Right-handed alpha
Helix 58	AG4	D	407	424	Right-handed alpha
Helix 59	AG5	D	439	445	Right-handed alpha
Helix 60	AG6	D	452	469	Right-handed alpha
Helix 61	AG7	D	470	472	Right-handed 310
Helix 62	AG8	D	524	539	Right-handed alpha
Helix 63	AG9	D	549	553	Right-handed 310
Helix 64	AH1	D	600	615	Right-handed alpha
Helix 65	AH2	D	621	624	Right-handed 310
Helix 66	AH3	D	625	631	Right-handed alpha
Helix 67	AH4	D	632	636	Right-handed 310
Helix 68	AH5	D	653	671	Right-handed alpha

There are 15 sheets in PDB entry 8YY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	2	9	parallel
Strand 4	A	131	138	parallel
Strand 5	A	165	168	parallel
Strand 6	A	200	201	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	204	205	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	8	parallel
Strand 4	B	130	136	parallel
Strand 5	B	163	167	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	265	270	parallel
Strand 3	B	363	371	anti-parallel
Strand 4	B	310	319	anti-parallel
Strand 5	B	349	351	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	349	355	parallel
Strand 3	C	640	647	parallel
Strand 4	C	427	434	parallel
Strand 5	C	570	580	parallel
Strand 6	C	554	565	anti-parallel
Strand 7	C	474	485	anti-parallel
Strand 8	C	488	491	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	349	355	parallel
Strand 3	C	640	647	parallel
Strand 4	C	427	434	parallel
Strand 5	C	570	580	parallel
Strand 6	C	554	565	anti-parallel
Strand 7	C	474	485	anti-parallel
Strand 8	C	520	521	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	371	first strand
Strand 2	C	377	381	anti-parallel
Strand 3	C	394	397	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	504	first strand
Strand 2	C	512	514	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	402	first strand
Strand 2	D	351	355	parallel
Strand 3	D	640	647	parallel
Strand 4	D	428	434	parallel
Strand 5	D	575	583	parallel
Strand 6	D	554	564	anti-parallel
Strand 7	D	474	484	anti-parallel
Strand 8	D	489	491	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	402	first strand
Strand 2	D	351	355	parallel
Strand 3	D	640	647	parallel
Strand 4	D	428	434	parallel
Strand 5	D	575	583	parallel
Strand 6	D	554	564	anti-parallel
Strand 7	D	474	484	anti-parallel
Strand 8	D	520	522	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	373	first strand
Strand 2	D	377	381	anti-parallel
Strand 3	D	395	397	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	502	504	first strand
Strand 2	D	512	514	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YY3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YY3