Analysis of interatomic Contacts of Structural Units in PDB entry:
8YY6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YY6 entry

There are 9 chains in PDB entry 8YY6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 3	SER 118
F	GLN 1	LYS 106
A	SER 155	ASP 1234
E	GLN 3	SER 118
H	GLN 1	LYS 106
B	SER 155	ASP 1234
G	GLN 3	SER 118
I	GLN 1	LYS 106
C	SER 155	ASP 1234

There are 39 helices in PDB entry 8YY6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	74	76	Right-handed 310
Helix 2	AA2	F	78	82	Right-handed 310
Helix 3	AA3	A	253	263	Right-handed alpha
Helix 4	AA4	A	284	286	Right-handed 310
Helix 5	AA5	A	372	374	Right-handed 310
Helix 6	AA6	A	386	390	Right-handed 310
Helix 7	AA7	A	415	419	Right-handed 310
Helix 8	AA8	A	467	484	Right-handed alpha
Helix 9	AA9	A	867	974	Right-handed alpha
Helix 10	AB1	A	976	996	Right-handed alpha
Helix 11	AB2	A	1170	1174	Right-handed 310
Helix 12	AB3	A	1200	1206	Right-handed alpha
Helix 13	AB4	A	1211	1231	Right-handed alpha
Helix 14	AB5	E	74	76	Right-handed 310
Helix 15	AB6	H	78	82	Right-handed 310
Helix 16	AB7	B	253	263	Right-handed alpha
Helix 17	AB8	B	284	286	Right-handed 310
Helix 18	AB9	B	372	374	Right-handed 310
Helix 19	AC1	B	386	390	Right-handed 310
Helix 20	AC2	B	415	419	Right-handed 310
Helix 21	AC3	B	467	484	Right-handed alpha
Helix 22	AC4	B	867	974	Right-handed alpha
Helix 23	AC5	B	976	996	Right-handed alpha
Helix 24	AC6	B	1170	1174	Right-handed 310
Helix 25	AC7	B	1200	1206	Right-handed alpha
Helix 26	AC8	B	1211	1231	Right-handed alpha
Helix 27	AC9	G	74	76	Right-handed 310
Helix 28	AD1	I	78	82	Right-handed 310
Helix 29	AD2	C	253	263	Right-handed alpha
Helix 30	AD3	C	284	286	Right-handed 310
Helix 31	AD4	C	372	374	Right-handed 310
Helix 32	AD5	C	386	390	Right-handed 310
Helix 33	AD6	C	415	419	Right-handed 310
Helix 34	AD7	C	467	484	Right-handed alpha
Helix 35	AD8	C	867	974	Right-handed alpha
Helix 36	AD9	C	976	996	Right-handed alpha
Helix 37	AE1	C	1170	1174	Right-handed 310
Helix 38	AE2	C	1200	1206	Right-handed alpha
Helix 39	AE3	C	1211	1231	Right-handed alpha

There are 39 sheets in PDB entry 8YY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	69	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	112	116	parallel
Strand 3	D	93	98	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	59	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	20	25	anti-parallel
Strand 3	F	69	73	anti-parallel
Strand 4	F	62	66	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	47	first strand
Strand 2	F	33	37	anti-parallel
Strand 3	F	84	88	anti-parallel
Strand 4	F	101	102	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1000	1002	first strand
Strand 2	A	1018	1021	anti-parallel
Strand 3	A	168	172	anti-parallel
Strand 4	C	1176	1177	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	453	first strand
Strand 2	A	440	444	anti-parallel
Strand 3	A	422	435	anti-parallel
Strand 4	A	187	197	anti-parallel
Strand 5	A	789	797	anti-parallel
Strand 6	A	487	489	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	453	first strand
Strand 2	A	440	444	anti-parallel
Strand 3	A	422	435	anti-parallel
Strand 4	A	187	197	anti-parallel
Strand 5	A	789	797	anti-parallel
Strand 6	A	780	783	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	250	first strand
Strand 2	A	217	233	anti-parallel
Strand 3	A	327	340	anti-parallel
Strand 4	A	347	349	anti-parallel
Strand 5	A	354	355	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	304	307	anti-parallel
Strand 3	A	327	340	anti-parallel
Strand 4	A	217	233	anti-parallel
Strand 5	A	408	412	anti-parallel
Strand 6	A	397	403	anti-parallel
Strand 7	A	376	382	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	290	292	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	280	282	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1061	1064	first strand
Strand 2	A	1073	1076	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1151	1153	first strand
Strand 2	A	1156	1161	anti-parallel
Strand 3	A	1164	1169	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1176	1177	first strand
Strand 2	B	168	172	parallel
Strand 3	B	1018	1021	anti-parallel
Strand 4	B	1000	1002	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	69	72	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	112	116	parallel
Strand 3	E	93	98	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	59	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	20	25	anti-parallel
Strand 3	H	69	73	anti-parallel
Strand 4	H	62	66	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	47	first strand
Strand 2	H	33	37	anti-parallel
Strand 3	H	84	88	anti-parallel
Strand 4	H	101	102	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	453	first strand
Strand 2	B	440	444	anti-parallel
Strand 3	B	422	435	anti-parallel
Strand 4	B	187	197	anti-parallel
Strand 5	B	789	797	anti-parallel
Strand 6	B	487	489	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	453	first strand
Strand 2	B	440	444	anti-parallel
Strand 3	B	422	435	anti-parallel
Strand 4	B	187	197	anti-parallel
Strand 5	B	789	797	anti-parallel
Strand 6	B	780	783	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	250	first strand
Strand 2	B	217	233	anti-parallel
Strand 3	B	327	340	anti-parallel
Strand 4	B	347	349	anti-parallel
Strand 5	B	354	355	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	304	307	anti-parallel
Strand 3	B	327	340	anti-parallel
Strand 4	B	217	233	anti-parallel
Strand 5	B	408	412	anti-parallel
Strand 6	B	397	403	anti-parallel
Strand 7	B	376	382	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	290	292	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	280	282	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1061	1064	first strand
Strand 2	B	1073	1076	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1151	1153	first strand
Strand 2	B	1156	1161	anti-parallel
Strand 3	B	1164	1169	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1176	1177	first strand
Strand 2	C	168	172	parallel
Strand 3	C	1018	1021	anti-parallel
Strand 4	C	1000	1002	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	69	72	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	112	116	parallel
Strand 3	G	93	98	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	59	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	20	25	anti-parallel
Strand 3	I	69	73	anti-parallel
Strand 4	I	62	66	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	47	first strand
Strand 2	I	33	37	anti-parallel
Strand 3	I	84	88	anti-parallel
Strand 4	I	101	102	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	453	first strand
Strand 2	C	440	444	anti-parallel
Strand 3	C	422	435	anti-parallel
Strand 4	C	187	197	anti-parallel
Strand 5	C	789	797	anti-parallel
Strand 6	C	487	489	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	453	first strand
Strand 2	C	440	444	anti-parallel
Strand 3	C	422	435	anti-parallel
Strand 4	C	187	197	anti-parallel
Strand 5	C	789	797	anti-parallel
Strand 6	C	780	783	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	250	first strand
Strand 2	C	217	233	anti-parallel
Strand 3	C	327	340	anti-parallel
Strand 4	C	347	349	anti-parallel
Strand 5	C	354	355	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	296	first strand
Strand 2	C	304	307	anti-parallel
Strand 3	C	327	340	anti-parallel
Strand 4	C	217	233	anti-parallel
Strand 5	C	408	412	anti-parallel
Strand 6	C	397	403	anti-parallel
Strand 7	C	376	382	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	C	290	292	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	271	first strand
Strand 2	C	280	282	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1061	1064	first strand
Strand 2	C	1073	1076	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1151	1153	first strand
Strand 2	C	1156	1161	anti-parallel
Strand 3	C	1164	1169	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YY6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YY6