Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YYE entry

There are 2 chains in PDB entry 8YYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4LYS 385
B
 SER 3LYS 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8YYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 42Right-handed alpha
Helix 2
AA2
A
56 70Right-handed alpha
Helix 3
AA3
A
76 84Right-handed alpha
Helix 4
AA4
A
111 127Right-handed alpha
Helix 5
AA5
A
128 138Right-handed alpha
Helix 6
AA6
A
139 142Right-handed 310
Helix 7
AA7
A
144 148Right-handed 310
Helix 8
AA8
A
169 173Right-handed 310
Helix 9
AA9
A
174 190Right-handed alpha
Helix 10
AB1
A
193 197Right-handed 310
Helix 11
AB2
A
203 207Right-handed 310
Helix 12
AB3
A
215 226Right-handed alpha
Helix 13
AB4
A
227 231Right-handed 310
Helix 14
AB5
A
234 240Right-handed alpha
Helix 15
AB6
A
240 249Right-handed alpha
Helix 16
AB7
A
286 296Right-handed alpha
Helix 17
AB8
A
306 310Right-handed 310
Helix 18
AB9
A
317 322Right-handed alpha
Helix 19
AC1
A
353 357Right-handed 310
Helix 20
AC2
A
368 382Right-handed alpha
Helix 21
AC3
B
34 42Right-handed alpha
Helix 22
AC4
B
56 70Right-handed alpha
Helix 23
AC5
B
76 84Right-handed alpha
Helix 24
AC6
B
111 127Right-handed alpha
Helix 25
AC7
B
128 138Right-handed alpha
Helix 26
AC8
B
139 142Right-handed 310
Helix 27
AC9
B
144 149Right-handed alpha
Helix 28
AD1
B
169 173Right-handed 310
Helix 29
AD2
B
174 190Right-handed alpha
Helix 30
AD3
B
193 197Right-handed 310
Helix 31
AD4
B
203 207Right-handed 310
Helix 32
AD5
B
215 226Right-handed alpha
Helix 33
AD6
B
227 231Right-handed 310
Helix 34
AD7
B
234 239Right-handed alpha
Helix 35
AD8
B
240 249Right-handed alpha
Helix 36
AD9
B
283 285Right-handed 310
Helix 37
AE1
B
286 294Right-handed alpha
Helix 38
AE2
B
306 310Right-handed 310
Helix 39
AE3
B
317 322Right-handed alpha
Helix 40
AE4
B
351 357Right-handed 310
Helix 41
AE5
B
368 382Right-handed alpha
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There are 8 sheets in PDB entry 8YYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
9 12parallel
Strand 3
A
105 110parallel
Strand 4
A
154 160parallel
Strand 5
A
258 262parallel
Strand 6
A
341 343parallel
Strand 7
A
329 331parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
88 92anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
347 348parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
276 278anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
9 12parallel
Strand 3
B
105 110parallel
Strand 4
B
154 160parallel
Strand 5
B
258 262parallel
Strand 6
B
341 343parallel
Strand 7
B
329 331parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
88 92anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 265first strand
Strand 2
B
347 348parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 269first strand
Strand 2
B
276 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il