Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YYF entry

There is 1 chain in PDB entry 8YYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ASP 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8YYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 65Right-handed alpha
Helix 2
AA2
A
78 83Right-handed alpha
Helix 3
AA3
A
84 92Right-handed alpha
Helix 4
AA4
A
99 113Right-handed alpha
Helix 5
AA5
A
174 178Right-handed 310
Helix 6
AA6
A
180 191Right-handed alpha
Helix 7
AA7
A
210 224Right-handed alpha
Helix 8
AA8
A
237 251Right-handed alpha
Helix 9
AA9
A
259 273Right-handed alpha
Helix 10
AB1
A
284 291Right-handed 310
Helix 11
AB2
A
292 294Right-handed 310
Helix 12
AB3
A
306 316Right-handed alpha
Helix 13
AB4
A
337 339Right-handed 310
Helix 14
AB5
A
340 354Right-handed alpha
Helix 15
AB6
A
372 384Right-handed alpha
Helix 16
AB7
A
394 408Right-handed alpha
Helix 17
AB8
A
411 415Right-handed 310
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There are 4 sheets in PDB entry 8YYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
96 98parallel
Strand 3
A
69 73parallel
Strand 4
A
34 38parallel
Strand 5
A
26 31anti-parallel
Strand 6
A
11 17anti-parallel
Strand 7
A
422 426anti-parallel
Strand 8
A
431 436anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
441 444anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
136 142anti-parallel
Strand 3
A
149 155anti-parallel
Strand 4
A
160 163anti-parallel
Strand 5
A
192 198parallel
Strand 6
A
387 391parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
296 300parallel
Strand 3
A
229 233parallel
Strand 4
A
329 333parallel
Strand 5
A
357 358parallel
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