Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YYK entry

There are 4 chains in PDB entry 8YYK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	ILE 444
B	LEU 3	ILE 444
C	LEU 3	ILE 444
D	LEU 3	ILE 444

There are 66 helices in PDB entry 8YYK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	65	Right-handed alpha
Helix 2	AA2	A	78	83	Right-handed alpha
Helix 3	AA3	A	84	92	Right-handed alpha
Helix 4	AA4	A	99	113	Right-handed alpha
Helix 5	AA5	A	180	191	Right-handed alpha
Helix 6	AA6	A	210	223	Right-handed alpha
Helix 7	AA7	A	237	251	Right-handed alpha
Helix 8	AA8	A	263	272	Right-handed alpha
Helix 9	AA9	A	284	291	Right-handed 310
Helix 10	AB1	A	292	294	Right-handed 310
Helix 11	AB2	A	305	316	Right-handed alpha
Helix 12	AB3	A	337	339	Right-handed 310
Helix 13	AB4	A	340	354	Right-handed alpha
Helix 14	AB5	A	372	384	Right-handed alpha
Helix 15	AB6	A	394	409	Right-handed alpha
Helix 16	AB7	A	411	415	Right-handed 310
Helix 17	AB8	B	59	65	Right-handed alpha
Helix 18	AB9	B	78	83	Right-handed alpha
Helix 19	AC1	B	84	92	Right-handed alpha
Helix 20	AC2	B	99	113	Right-handed alpha
Helix 21	AC3	B	180	191	Right-handed alpha
Helix 22	AC4	B	210	223	Right-handed alpha
Helix 23	AC5	B	237	251	Right-handed alpha
Helix 24	AC6	B	263	272	Right-handed alpha
Helix 25	AC7	B	284	291	Right-handed 310
Helix 26	AC8	B	292	294	Right-handed 310
Helix 27	AC9	B	305	315	Right-handed alpha
Helix 28	AD1	B	337	339	Right-handed 310
Helix 29	AD2	B	340	354	Right-handed alpha
Helix 30	AD3	B	372	384	Right-handed alpha
Helix 31	AD4	B	394	409	Right-handed alpha
Helix 32	AD5	B	411	415	Right-handed 310
Helix 33	AD6	C	59	64	Right-handed alpha
Helix 34	AD7	C	65	67	Right-handed 310
Helix 35	AD8	C	78	83	Right-handed alpha
Helix 36	AD9	C	84	92	Right-handed alpha
Helix 37	AE1	C	99	113	Right-handed alpha
Helix 38	AE2	C	180	191	Right-handed alpha
Helix 39	AE3	C	210	223	Right-handed alpha
Helix 40	AE4	C	237	251	Right-handed alpha
Helix 41	AE5	C	263	272	Right-handed alpha
Helix 42	AE6	C	284	288	Right-handed 310
Helix 43	AE7	C	292	294	Right-handed 310
Helix 44	AE8	C	305	314	Right-handed alpha
Helix 45	AE9	C	337	339	Right-handed 310
Helix 46	AF1	C	340	354	Right-handed alpha
Helix 47	AF2	C	372	384	Right-handed alpha
Helix 48	AF3	C	394	408	Right-handed alpha
Helix 49	AF4	C	411	415	Right-handed 310
Helix 50	AF5	D	59	64	Right-handed alpha
Helix 51	AF6	D	65	67	Right-handed 310
Helix 52	AF7	D	78	83	Right-handed alpha
Helix 53	AF8	D	84	92	Right-handed alpha
Helix 54	AF9	D	99	113	Right-handed alpha
Helix 55	AG1	D	180	191	Right-handed alpha
Helix 56	AG2	D	210	224	Right-handed alpha
Helix 57	AG3	D	237	251	Right-handed alpha
Helix 58	AG4	D	263	272	Right-handed alpha
Helix 59	AG5	D	284	291	Right-handed 310
Helix 60	AG6	D	292	294	Right-handed 310
Helix 61	AG7	D	305	316	Right-handed alpha
Helix 62	AG8	D	337	339	Right-handed 310
Helix 63	AG9	D	340	354	Right-handed alpha
Helix 64	AH1	D	372	384	Right-handed alpha
Helix 65	AH2	D	394	409	Right-handed alpha
Helix 66	AH3	D	411	415	Right-handed 310

There are 16 sheets in PDB entry 8YYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	96	98	parallel
Strand 3	A	69	74	parallel
Strand 4	A	34	38	parallel
Strand 5	A	26	31	anti-parallel
Strand 6	A	11	17	anti-parallel
Strand 7	A	422	426	anti-parallel
Strand 8	A	431	436	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	441	444	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	136	142	anti-parallel
Strand 3	A	149	156	anti-parallel
Strand 4	A	159	163	anti-parallel
Strand 5	A	192	198	parallel
Strand 6	A	385	391	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	257	first strand
Strand 2	A	296	302	parallel
Strand 3	A	229	234	parallel
Strand 4	A	329	332	parallel
Strand 5	A	357	358	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	96	98	parallel
Strand 3	B	69	74	parallel
Strand 4	B	34	38	parallel
Strand 5	B	26	31	anti-parallel
Strand 6	B	11	17	anti-parallel
Strand 7	B	422	426	anti-parallel
Strand 8	B	431	436	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	441	443	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	136	142	anti-parallel
Strand 3	B	149	156	anti-parallel
Strand 4	B	159	163	anti-parallel
Strand 5	B	192	198	parallel
Strand 6	B	385	391	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	257	first strand
Strand 2	B	296	300	parallel
Strand 3	B	229	233	parallel
Strand 4	B	329	333	parallel
Strand 5	B	357	358	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	123	first strand
Strand 2	C	96	98	parallel
Strand 3	C	69	74	parallel
Strand 4	C	34	38	parallel
Strand 5	C	26	31	anti-parallel
Strand 6	C	11	17	anti-parallel
Strand 7	C	422	426	anti-parallel
Strand 8	C	431	436	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	441	443	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	136	142	anti-parallel
Strand 3	C	149	156	anti-parallel
Strand 4	C	159	163	anti-parallel
Strand 5	C	192	198	parallel
Strand 6	C	385	391	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	257	first strand
Strand 2	C	296	302	parallel
Strand 3	C	229	234	parallel
Strand 4	C	329	332	parallel
Strand 5	C	357	358	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	123	first strand
Strand 2	D	96	98	parallel
Strand 3	D	69	73	parallel
Strand 4	D	34	38	parallel
Strand 5	D	26	31	anti-parallel
Strand 6	D	11	17	anti-parallel
Strand 7	D	422	426	anti-parallel
Strand 8	D	431	436	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	57	first strand
Strand 2	D	441	444	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	136	142	anti-parallel
Strand 3	D	149	156	anti-parallel
Strand 4	D	159	163	anti-parallel
Strand 5	D	192	198	parallel
Strand 6	D	387	391	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	257	first strand
Strand 2	D	296	302	parallel
Strand 3	D	229	234	parallel
Strand 4	D	328	333	parallel
Strand 5	D	356	358	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YYK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYK