Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YYL entry

There are 3 chains in PDB entry 8YYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 28	ALA 619
B	PRO 336	ASP 934
C	ASN 3	ASN 51

There are 20 helices in PDB entry 8YYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	51	Right-handed 310
Helix 2	AA2	A	69	73	Right-handed 310
Helix 3	AA3	A	220	224	Right-handed 310
Helix 4	AA4	A	282	295	Right-handed alpha
Helix 5	AA5	A	350	356	Right-handed alpha
Helix 6	AA6	A	376	386	Right-handed alpha
Helix 7	AA7	A	466	473	Right-handed alpha
Helix 8	AA8	A	523	525	Right-handed 310
Helix 9	AA9	B	342	345	Right-handed 310
Helix 10	AB1	B	350	356	Right-handed alpha
Helix 11	AB2	B	376	386	Right-handed alpha
Helix 12	AB3	B	462	474	Right-handed alpha
Helix 13	AB4	B	523	525	Right-handed 310
Helix 14	AB5	B	569	573	Right-handed 310
Helix 15	AB6	B	665	670	Right-handed 310
Helix 16	AB7	B	718	741	Right-handed alpha
Helix 17	AB8	B	890	897	Right-handed alpha
Helix 18	AB9	C	8	19	Right-handed alpha
Helix 19	AC1	C	32	37	Right-handed alpha
Helix 20	AC2	C	42	50	Right-handed alpha

There are 22 sheets in PDB entry 8YYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	53	56	parallel
Strand 3	A	83	84	parallel
Strand 4	A	108	109	parallel
Strand 5	A	138	139	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	60	65	parallel
Strand 3	A	88	93	parallel
Strand 4	A	120	123	parallel
Strand 5	A	144	147	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	204	207	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	263	265	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	279	281	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	310	312	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	328	330	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	348	first strand
Strand 2	A	362	369	parallel
Strand 3	A	390	391	parallel
Strand 4	A	414	415	parallel
Strand 5	A	447	448	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	348	first strand
Strand 2	A	362	369	parallel
Strand 3	A	395	398	parallel
Strand 4	A	427	430	parallel
Strand 5	A	455	456	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	500	first strand
Strand 2	A	608	610	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	507	first strand
Strand 2	A	512	516	anti-parallel
Strand 3	A	577	580	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	561	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	588	597	anti-parallel
Strand 4	A	613	616	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	362	364	parallel
Strand 3	B	390	391	parallel
Strand 4	B	414	415	parallel
Strand 5	B	447	448	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	367	369	parallel
Strand 3	B	395	398	parallel
Strand 4	B	427	430	parallel
Strand 5	B	455	456	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	500	first strand
Strand 2	B	609	610	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	515	first strand
Strand 2	B	577	581	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	561	first strand
Strand 2	B	527	536	anti-parallel
Strand 3	B	588	597	anti-parallel
Strand 4	B	613	616	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	634	first strand
Strand 2	B	637	643	anti-parallel
Strand 3	B	794	797	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	790	first strand
Strand 2	B	654	661	anti-parallel
Strand 3	B	805	815	anti-parallel
Strand 4	B	821	822	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	790	first strand
Strand 2	B	654	661	anti-parallel
Strand 3	B	805	815	anti-parallel
Strand 4	B	826	831	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	849	first strand
Strand 2	B	855	858	anti-parallel
Strand 3	B	899	901	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	889	first strand
Strand 2	B	869	878	anti-parallel
Strand 3	B	907	917	anti-parallel
Strand 4	B	928	932	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYL