Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YYP entry

There are 2 chains in PDB entry 8YYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19TRP 412
B
 PRO 19TRP 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8YYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 43Right-handed alpha
Helix 2
AA2
A
61 71Right-handed alpha
Helix 3
AA3
A
76 81Right-handed 310
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
108 116Right-handed alpha
Helix 6
AA6
A
117 122Right-handed 310
Helix 7
AA7
A
123 143Right-handed alpha
Helix 8
AA8
A
148 152Right-handed alpha
Helix 9
AA9
A
152 166Right-handed alpha
Helix 10
AB1
A
171 183Right-handed alpha
Helix 11
AB2
A
192 209Right-handed alpha
Helix 12
AB3
A
216 225Right-handed alpha
Helix 13
AB4
A
236 269Right-handed alpha
Helix 14
AB5
A
269 279Right-handed alpha
Helix 15
AB6
A
282 294Right-handed alpha
Helix 16
AB7
A
325 331Right-handed alpha
Helix 17
AB8
A
356 360Right-handed 310
Helix 18
AB9
A
363 382Right-handed alpha
Helix 19
AC1
A
390 394Right-handed 310
Helix 20
AC2
B
33 43Right-handed alpha
Helix 21
AC3
B
61 71Right-handed alpha
Helix 22
AC4
B
76 81Right-handed 310
Helix 23
AC5
B
93 97Right-handed 310
Helix 24
AC6
B
98 106Right-handed alpha
Helix 25
AC7
B
108 117Right-handed alpha
Helix 26
AC8
B
123 143Right-handed alpha
Helix 27
AC9
B
148 152Right-handed alpha
Helix 28
AD1
B
152 166Right-handed alpha
Helix 29
AD2
B
171 183Right-handed alpha
Helix 30
AD3
B
192 209Right-handed alpha
Helix 31
AD4
B
216 226Right-handed alpha
Helix 32
AD5
B
236 269Right-handed alpha
Helix 33
AD6
B
269 279Right-handed alpha
Helix 34
AD7
B
282 294Right-handed alpha
Helix 35
AD8
B
325 331Right-handed alpha
Helix 36
AD9
B
356 360Right-handed 310
Helix 37
AE1
B
363 382Right-handed alpha
Helix 38
AE2
B
390 394Right-handed 310
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There are 6 sheets in PDB entry 8YYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
321 324parallel
Strand 4
A
301 305anti-parallel
Strand 5
A
74 75anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
409 411anti-parallel
Strand 3
A
386 387anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
314 316anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
55 59anti-parallel
Strand 3
B
321 324parallel
Strand 4
B
301 305anti-parallel
Strand 5
B
74 75anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
409 411anti-parallel
Strand 3
B
386 387anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
314 316anti-parallel
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