Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YYT entry

There are 6 chains in PDB entry 8YYT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 28	ASP 934
B	HIS 28	ASP 934
C	ASN 3	ASN 51
D	ASN 3	ASN 51
E	ASN 3	ASN 51
F	ASN 3	ASN 51

There are 37 helices in PDB entry 8YYT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed 310
Helix 2	AA2	A	220	224	Right-handed 310
Helix 3	AA3	A	282	297	Right-handed alpha
Helix 4	AA4	A	341	343	Right-handed 310
Helix 5	AA5	A	350	355	Right-handed alpha
Helix 6	AA6	A	356	358	Right-handed 310
Helix 7	AA7	A	378	386	Right-handed alpha
Helix 8	AA8	A	462	473	Right-handed alpha
Helix 9	AA9	A	666	670	Right-handed 310
Helix 10	AB1	A	722	741	Right-handed alpha
Helix 11	AB2	A	890	897	Right-handed alpha
Helix 12	AB3	B	175	180	Right-handed 310
Helix 13	AB4	B	220	224	Right-handed 310
Helix 14	AB5	B	282	297	Right-handed alpha
Helix 15	AB6	B	341	343	Right-handed 310
Helix 16	AB7	B	350	355	Right-handed alpha
Helix 17	AB8	B	356	358	Right-handed 310
Helix 18	AB9	B	378	386	Right-handed alpha
Helix 19	AC1	B	462	473	Right-handed alpha
Helix 20	AC2	B	666	670	Right-handed 310
Helix 21	AC3	B	722	741	Right-handed alpha
Helix 22	AC4	B	890	897	Right-handed alpha
Helix 23	AC5	C	9	15	Right-handed alpha
Helix 24	AC6	C	16	18	Right-handed 310
Helix 25	AC7	C	32	37	Right-handed alpha
Helix 26	AC8	C	42	47	Right-handed alpha
Helix 27	AC9	C	48	51	Right-handed 310
Helix 28	AD1	D	9	16	Right-handed alpha
Helix 29	AD2	D	32	37	Right-handed alpha
Helix 30	AD3	D	42	47	Right-handed alpha
Helix 31	AD4	D	48	51	Right-handed 310
Helix 32	AD5	E	8	20	Right-handed alpha
Helix 33	AD6	E	32	37	Right-handed alpha
Helix 34	AD7	E	42	47	Right-handed alpha
Helix 35	AD8	F	8	20	Right-handed alpha
Helix 36	AD9	F	32	37	Right-handed alpha
Helix 37	AE1	F	42	47	Right-handed alpha

There are 29 sheets in PDB entry 8YYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	60	63	parallel
Strand 3	A	88	91	parallel
Strand 4	A	120	123	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	108	109	parallel
Strand 3	A	138	139	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	204	207	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	310	312	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	329	330	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	348	first strand
Strand 2	A	366	369	parallel
Strand 3	A	395	397	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	390	391	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	507	first strand
Strand 2	A	511	515	anti-parallel
Strand 3	A	577	581	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	561	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	588	597	anti-parallel
Strand 4	A	613	616	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	626	first strand
Strand 2	A	638	643	anti-parallel
Strand 3	A	629	632	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	626	first strand
Strand 2	A	638	643	anti-parallel
Strand 3	A	794	797	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	786	789	first strand
Strand 2	A	654	661	anti-parallel
Strand 3	A	806	813	anti-parallel
Strand 4	A	826	830	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	849	first strand
Strand 2	A	855	858	anti-parallel
Strand 3	A	900	901	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	889	first strand
Strand 2	A	871	878	anti-parallel
Strand 3	A	907	916	anti-parallel
Strand 4	A	921	924	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	889	first strand
Strand 2	A	871	878	anti-parallel
Strand 3	A	907	916	anti-parallel
Strand 4	A	928	932	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	60	63	parallel
Strand 3	B	88	91	parallel
Strand 4	B	120	123	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	108	109	parallel
Strand 3	B	138	139	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	201	first strand
Strand 2	B	204	207	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	307	first strand
Strand 2	B	310	312	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	320	first strand
Strand 2	B	329	330	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	348	first strand
Strand 2	B	366	369	parallel
Strand 3	B	395	397	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	390	391	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	507	first strand
Strand 2	B	512	515	anti-parallel
Strand 3	B	577	580	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	561	first strand
Strand 2	B	527	536	anti-parallel
Strand 3	B	588	597	anti-parallel
Strand 4	B	613	616	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	631	first strand
Strand 2	B	638	643	anti-parallel
Strand 3	B	794	797	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	789	first strand
Strand 2	B	654	661	anti-parallel
Strand 3	B	806	813	anti-parallel
Strand 4	B	826	830	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	849	first strand
Strand 2	B	855	858	anti-parallel
Strand 3	B	900	901	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	889	first strand
Strand 2	B	871	878	anti-parallel
Strand 3	B	907	916	anti-parallel
Strand 4	B	921	924	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	889	first strand
Strand 2	B	871	878	anti-parallel
Strand 3	B	907	916	anti-parallel
Strand 4	B	928	932	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YYT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYT