Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YYU entry

There are 8 chains in PDB entry 8YYU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 135	GLY 700
A	ILE 702	GLU 711
C	A 1	C 18
B	T 1	G 18
D	MET 135	GLY 700
D	ILE 702	GLU 711
E	A 1	C 18
F	T 1	G 18

There are 36 helices in PDB entry 8YYU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	178	Right-handed alpha
Helix 2	AA2	A	204	234	Right-handed alpha
Helix 3	AA3	A	236	249	Right-handed alpha
Helix 4	AA4	A	256	285	Right-handed alpha
Helix 5	AA5	A	292	297	Right-handed alpha
Helix 6	AA6	A	297	315	Right-handed alpha
Helix 7	AA7	A	369	374	Right-handed alpha
Helix 8	AA8	A	463	475	Right-handed alpha
Helix 9	AA9	A	485	489	Right-handed 310
Helix 10	AB1	A	495	510	Right-handed alpha
Helix 11	AB2	A	515	528	Right-handed alpha
Helix 12	AB3	A	539	545	Right-handed alpha
Helix 13	AB4	A	554	569	Right-handed alpha
Helix 14	AB5	A	569	575	Right-handed alpha
Helix 15	AB6	A	587	591	Right-handed 310
Helix 16	AB7	A	635	642	Right-handed alpha
Helix 17	AB8	A	643	650	Right-handed alpha
Helix 18	AB9	A	672	677	Right-handed alpha
Helix 19	AC1	D	138	178	Right-handed alpha
Helix 20	AC2	D	204	235	Right-handed alpha
Helix 21	AC3	D	236	249	Right-handed alpha
Helix 22	AC4	D	256	285	Right-handed alpha
Helix 23	AC5	D	292	297	Right-handed alpha
Helix 24	AC6	D	297	315	Right-handed alpha
Helix 25	AC7	D	369	374	Right-handed alpha
Helix 26	AC8	D	463	477	Right-handed alpha
Helix 27	AC9	D	485	489	Right-handed 310
Helix 28	AD1	D	495	510	Right-handed alpha
Helix 29	AD2	D	515	527	Right-handed alpha
Helix 30	AD3	D	539	544	Right-handed alpha
Helix 31	AD4	D	554	569	Right-handed alpha
Helix 32	AD5	D	569	575	Right-handed alpha
Helix 33	AD6	D	587	591	Right-handed 310
Helix 34	AD7	D	635	642	Right-handed alpha
Helix 35	AD8	D	643	650	Right-handed alpha
Helix 36	AD9	D	672	677	Right-handed alpha

There are 13 sheets in PDB entry 8YYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	324	first strand
Strand 2	A	341	347	anti-parallel
Strand 3	A	400	407	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	456	458	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	433	441	anti-parallel
Strand 4	A	444	451	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	410	411	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	494	first strand
Strand 2	A	536	538	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	603	first strand
Strand 2	A	612	616	anti-parallel
Strand 3	A	629	630	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	705	first strand
Strand 2	D	709	710	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	710	first strand
Strand 2	D	704	706	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	324	first strand
Strand 2	D	341	347	anti-parallel
Strand 3	D	400	407	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	444	458	parallel
Strand 3	D	430	441	anti-parallel
Strand 4	D	359	364	anti-parallel
Strand 5	D	388	389	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	382	first strand
Strand 2	D	409	411	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	494	first strand
Strand 2	D	536	538	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	599	603	first strand
Strand 2	D	612	616	anti-parallel
Strand 3	D	629	630	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YYU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYU