Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YYV entry

There are 4 chains in PDB entry 8YYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 135GLY 700
A
 ILE 702GLU 711
C
 A 1 C 18
B
 T 1 G 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8YYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
137 179Right-handed alpha
Helix 2
AA2
A
199 234Right-handed alpha
Helix 3
AA3
A
234 248Right-handed alpha
Helix 4
AA4
A
256 285Right-handed alpha
Helix 5
AA5
A
292 297Right-handed alpha
Helix 6
AA6
A
297 317Right-handed alpha
Helix 7
AA7
A
368 372Right-handed 310
Helix 8
AA8
A
463 478Right-handed alpha
Helix 9
AA9
A
495 510Right-handed alpha
Helix 10
AB1
A
515 528Right-handed alpha
Helix 11
AB2
A
538 544Right-handed alpha
Helix 12
AB3
A
553 569Right-handed alpha
Helix 13
AB4
A
569 575Right-handed alpha
Helix 14
AB5
A
587 591Right-handed 310
Helix 15
AB6
A
635 640Right-handed alpha
Helix 16
AB7
A
643 651Right-handed alpha
Helix 17
AB8
A
672 677Right-handed alpha
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There are 6 sheets in PDB entry 8YYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
342 347anti-parallel
Strand 3
A
400 404anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 336first strand
Strand 2
A
456 458parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
359 364anti-parallel
Strand 3
A
433 440anti-parallel
Strand 4
A
445 451anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
409 411anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 494first strand
Strand 2
A
536 537anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 600first strand
Strand 2
A
615 616anti-parallel
Strand 3
A
629 630anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il