Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YYW entry

There are 5 chains in PDB entry 8YYW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 2	LEU 247
C	SER 2	ASN 340
D	ALA 7	GLU 63
E	ASN 23	SER 322
F	GLY 2	VAL 354

There are 30 helices in PDB entry 8YYW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	28	32	Right-handed 310
Helix 2	AA2	B	53	56	Right-handed 310
Helix 3	AA3	B	87	91	Right-handed 310
Helix 4	AA4	C	3	25	Right-handed alpha
Helix 5	AA5	C	29	34	Right-handed alpha
Helix 6	AA6	D	8	12	Right-handed alpha
Helix 7	AA7	D	13	23	Right-handed alpha
Helix 8	AA8	D	29	44	Right-handed alpha
Helix 9	AA9	D	45	48	Right-handed 310
Helix 10	AB1	E	28	35	Right-handed alpha
Helix 11	AB2	E	35	61	Right-handed alpha
Helix 12	AB3	E	68	85	Right-handed alpha
Helix 13	AB4	E	85	95	Right-handed alpha
Helix 14	AB5	E	102	137	Right-handed alpha
Helix 15	AB6	E	146	171	Right-handed alpha
Helix 16	AB7	E	176	180	Right-handed 310
Helix 17	AB8	E	185	189	Right-handed 310
Helix 18	AB9	E	191	207	Right-handed alpha
Helix 19	AC1	E	207	225	Right-handed alpha
Helix 20	AC2	E	237	270	Right-handed alpha
Helix 21	AC3	E	273	288	Right-handed alpha
Helix 22	AC4	E	289	303	Right-handed alpha
Helix 23	AC5	E	306	322	Right-handed alpha
Helix 24	AC6	F	6	31	Right-handed alpha
Helix 25	AC7	F	47	52	Right-handed 310
Helix 26	AC8	F	207	216	Right-handed 310
Helix 27	AC9	F	241	255	Right-handed alpha
Helix 28	AD1	F	270	281	Right-handed alpha
Helix 29	AD2	F	295	309	Right-handed alpha
Helix 30	AD3	F	329	347	Right-handed alpha

There are 13 sheets in PDB entry 8YYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	78	84	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	111	119	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	155	161	anti-parallel
Strand 3	B	211	216	anti-parallel
Strand 4	B	203	207	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	243	246	parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	174	179	anti-parallel
Strand 5	B	186	190	anti-parallel
Strand 6	B	194	195	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	336	340	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	111	115	anti-parallel
Strand 3	C	120	125	anti-parallel
Strand 4	C	134	140	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	175	181	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	198	202	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	218	223	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	259	264	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	304	308	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	175	first strand
Strand 2	E	182	183	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	189	first strand
Strand 2	F	196	200	anti-parallel
Strand 3	F	34	39	parallel
Strand 4	F	220	226	parallel
Strand 5	F	263	269	parallel
Strand 6	F	319	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YYW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YYW