Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YZ3 entry

There is 1 chain in PDB entry 8YZ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -4VAL 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8YZ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 4Right-handed alpha
Helix 2
AA2
A
32 46Right-handed alpha
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
66 87Right-handed alpha
Helix 5
AA5
A
114 134Right-handed alpha
Helix 6
AA6
A
152 154Right-handed 310
Helix 7
AA7
A
155 167Right-handed alpha
Helix 8
AA8
A
180 187Right-handed alpha
Helix 9
AA9
A
193 198Right-handed 310
Helix 10
AB1
A
221 225Right-handed 310
Helix 11
AB2
A
226 231Right-handed alpha
Helix 12
AB3
A
232 234Right-handed 310
Helix 13
AB4
A
268 277Right-handed alpha
Helix 14
AB5
A
302 319Right-handed alpha
Helix 15
AB6
A
338 349Right-handed alpha
Helix 16
AB7
A
364 369Right-handed alpha
Helix 17
AB8
A
371 373Right-handed 310
Helix 18
AB9
A
374 391Right-handed alpha
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There are 2 sheets in PDB entry 8YZ3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
17 27anti-parallel
Strand 3
A
282 285anti-parallel
Strand 4
A
404 411anti-parallel
Strand 5
A
288 291anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 149first strand
Strand 2
A
94 101parallel
Strand 3
A
172 179parallel
Strand 4
A
212 219anti-parallel
Strand 5
A
17 27anti-parallel
Strand 6
A
282 285anti-parallel
Strand 7
A
404 411anti-parallel
Strand 8
A
394 398anti-parallel
Strand 9
A
328 331parallel
Strand 10
A
361 363parallel
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