Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YZ5 entry

There are 7 chains in PDB entry 8YZ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 20	GLN 1142
A	ASN 17	GLU 1144
D	THR 20	LEU 1141
G	GLU 1	ALA 114
K	ASP 1	ILE 104
I	GLU 1	SER 113
J	ASP 1	ARG 105

There are 57 helices in PDB entry 8YZ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	294	304	Right-handed alpha
Helix 2	AA2	C	337	343	Right-handed alpha
Helix 3	AA3	C	364	371	Right-handed alpha
Helix 4	AA4	C	383	388	Right-handed alpha
Helix 5	AA5	C	404	408	Right-handed 310
Helix 6	AA6	C	502	506	Right-handed 310
Helix 7	AA7	C	737	743	Right-handed alpha
Helix 8	AA8	C	746	754	Right-handed alpha
Helix 9	AA9	C	758	782	Right-handed alpha
Helix 10	AB1	C	816	826	Right-handed alpha
Helix 11	AB2	C	866	883	Right-handed alpha
Helix 12	AB3	C	897	909	Right-handed alpha
Helix 13	AB4	C	913	919	Right-handed alpha
Helix 14	AB5	C	919	941	Right-handed alpha
Helix 15	AB6	C	942	944	Right-handed 310
Helix 16	AB7	C	945	968	Right-handed alpha
Helix 17	AB8	C	977	982	Right-handed alpha
Helix 18	AB9	C	985	1031	Right-handed alpha
Helix 19	AC1	C	1116	1120	Right-handed 310
Helix 20	AC2	A	294	304	Right-handed alpha
Helix 21	AC3	A	338	343	Right-handed alpha
Helix 22	AC4	A	364	371	Right-handed alpha
Helix 23	AC5	A	416	421	Right-handed alpha
Helix 24	AC6	A	438	443	Right-handed alpha
Helix 25	AC7	A	746	755	Right-handed alpha
Helix 26	AC8	A	758	782	Right-handed alpha
Helix 27	AC9	A	816	825	Right-handed alpha
Helix 28	AD1	A	866	884	Right-handed alpha
Helix 29	AD2	A	897	908	Right-handed alpha
Helix 30	AD3	A	912	918	Right-handed alpha
Helix 31	AD4	A	919	941	Right-handed alpha
Helix 32	AD5	A	942	944	Right-handed 310
Helix 33	AD6	A	945	968	Right-handed alpha
Helix 34	AD7	A	976	984	Right-handed alpha
Helix 35	AD8	A	985	1031	Right-handed alpha
Helix 36	AD9	A	1116	1118	Right-handed 310
Helix 37	AE1	D	294	304	Right-handed alpha
Helix 38	AE2	D	338	343	Right-handed alpha
Helix 39	AE3	D	364	371	Right-handed alpha
Helix 40	AE4	D	385	390	Right-handed 310
Helix 41	AE5	D	403	408	Right-handed alpha
Helix 42	AE6	D	417	422	Right-handed alpha
Helix 43	AE7	D	502	506	Right-handed 310
Helix 44	AE8	D	746	755	Right-handed alpha
Helix 45	AE9	D	758	781	Right-handed alpha
Helix 46	AF1	D	816	825	Right-handed alpha
Helix 47	AF2	D	866	883	Right-handed alpha
Helix 48	AF3	D	897	908	Right-handed alpha
Helix 49	AF4	D	913	941	Right-handed alpha
Helix 50	AF5	D	945	968	Right-handed alpha
Helix 51	AF6	D	977	982	Right-handed alpha
Helix 52	AF7	D	985	1032	Right-handed alpha
Helix 53	AF8	D	1116	1120	Right-handed 310
Helix 54	AF9	G	83	87	Right-handed 310
Helix 55	AG1	K	77	81	Right-handed 310
Helix 56	AG2	I	83	87	Right-handed 310
Helix 57	AG3	J	77	81	Right-handed 310

There are 47 sheets in PDB entry 8YZ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	60	66	anti-parallel
Strand 3	C	264	267	anti-parallel
Strand 4	C	91	94	anti-parallel
Strand 5	C	189	197	anti-parallel
Strand 6	C	200	208	anti-parallel
Strand 7	C	224	229	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	A	565	567	parallel
Strand 3	A	573	577	anti-parallel
Strand 4	A	584	586	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	131	anti-parallel
Strand 6	C	170	171	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	243	244	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	319	first strand
Strand 2	C	592	598	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	644	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	539	542	parallel
Strand 3	C	547	554	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	575	577	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	402	anti-parallel
Strand 3	C	508	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	664	667	first strand
Strand 2	C	670	675	anti-parallel
Strand 3	C	691	696	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	727	first strand
Strand 2	C	1059	1075	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	858	860	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1081	1082	first strand
Strand 2	C	1087	1089	anti-parallel
Strand 3	C	1121	1122	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	61	67	anti-parallel
Strand 3	A	263	269	anti-parallel
Strand 4	A	90	96	anti-parallel
Strand 5	A	188	197	anti-parallel
Strand 6	A	200	209	anti-parallel
Strand 7	A	225	229	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	237	245	parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	131	anti-parallel
Strand 6	A	168	171	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	317	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	326	first strand
Strand 2	A	539	543	parallel
Strand 3	A	546	550	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	395	403	anti-parallel
Strand 3	A	507	514	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	378	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	667	first strand
Strand 2	A	670	675	anti-parallel
Strand 3	A	691	696	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	727	first strand
Strand 2	A	1059	1075	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1123	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1096	first strand
Strand 2	A	1103	1105	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	60	67	anti-parallel
Strand 3	D	263	269	anti-parallel
Strand 4	D	90	95	anti-parallel
Strand 5	D	189	197	anti-parallel
Strand 6	D	200	208	anti-parallel
Strand 7	D	224	229	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	55	first strand
Strand 2	D	271	279	anti-parallel
Strand 3	D	285	290	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	84	first strand
Strand 2	D	237	242	anti-parallel
Strand 3	D	101	107	anti-parallel
Strand 4	D	116	121	anti-parallel
Strand 5	D	126	131	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	318	first strand
Strand 2	D	593	599	anti-parallel
Strand 3	D	609	613	anti-parallel
Strand 4	D	648	651	anti-parallel
Strand 5	D	642	644	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	326	first strand
Strand 2	D	538	542	parallel
Strand 3	D	547	554	anti-parallel
Strand 4	D	584	588	anti-parallel
Strand 5	D	573	577	anti-parallel
Strand 6	D	565	567	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	394	402	anti-parallel
Strand 3	D	508	516	anti-parallel
Strand 4	D	431	437	anti-parallel
Strand 5	D	376	379	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	664	667	first strand
Strand 2	D	670	675	anti-parallel
Strand 3	D	691	696	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	727	first strand
Strand 2	D	1059	1076	anti-parallel
Strand 3	D	1047	1056	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	734	736	first strand
Strand 2	D	858	860	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1081	1082	first strand
Strand 2	D	1087	1088	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1094	1097	first strand
Strand 2	D	1102	1105	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	88	93	anti-parallel
Strand 5	G	107	109	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	100	103	parallel
Strand 3	K	82	84	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	22	first strand
Strand 2	K	70	73	anti-parallel
Strand 3	K	62	65	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	45	49	anti-parallel
Strand 3	K	33	37	anti-parallel
Strand 4	K	86	88	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	68	72	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	47	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	88	93	anti-parallel
Strand 5	I	107	109	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	100	103	parallel
Strand 3	J	82	84	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	23	first strand
Strand 2	J	69	73	anti-parallel
Strand 3	J	62	65	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	37	first strand
Strand 2	J	45	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YZ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZ5