Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YZ6 entry

There are 5 chains in PDB entry 8YZ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 25	ASN 1135
B	ALA 27	ASN 1135
C	THR 22	ASN 1135
D	GLU 1	SER 128
E	GLU 1	LYS 127

There are 59 helices in PDB entry 8YZ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	174	179	Right-handed alpha
Helix 2	AA2	A	294	304	Right-handed alpha
Helix 3	AA3	A	338	343	Right-handed alpha
Helix 4	AA4	A	365	371	Right-handed alpha
Helix 5	AA5	A	384	389	Right-handed 310
Helix 6	AA6	A	416	422	Right-handed alpha
Helix 7	AA7	A	438	443	Right-handed alpha
Helix 8	AA8	A	616	620	Right-handed 310
Helix 9	AA9	A	737	743	Right-handed alpha
Helix 10	AB1	A	746	755	Right-handed alpha
Helix 11	AB2	A	758	782	Right-handed alpha
Helix 12	AB3	A	816	826	Right-handed alpha
Helix 13	AB4	A	866	884	Right-handed alpha
Helix 14	AB5	A	885	891	Right-handed 310
Helix 15	AB6	A	897	909	Right-handed alpha
Helix 16	AB7	A	912	918	Right-handed alpha
Helix 17	AB8	A	919	941	Right-handed alpha
Helix 18	AB9	A	945	965	Right-handed alpha
Helix 19	AC1	A	976	984	Right-handed alpha
Helix 20	AC2	A	985	1033	Right-handed alpha
Helix 21	AC3	B	294	304	Right-handed alpha
Helix 22	AC4	B	337	343	Right-handed alpha
Helix 23	AC5	B	365	372	Right-handed alpha
Helix 24	AC6	B	383	388	Right-handed alpha
Helix 25	AC7	B	737	743	Right-handed alpha
Helix 26	AC8	B	746	754	Right-handed alpha
Helix 27	AC9	B	755	757	Right-handed 310
Helix 28	AD1	B	758	782	Right-handed alpha
Helix 29	AD2	B	816	826	Right-handed alpha
Helix 30	AD3	B	866	884	Right-handed alpha
Helix 31	AD4	B	885	890	Right-handed 310
Helix 32	AD5	B	897	910	Right-handed alpha
Helix 33	AD6	B	912	941	Right-handed alpha
Helix 34	AD7	B	945	967	Right-handed alpha
Helix 35	AD8	B	976	984	Right-handed alpha
Helix 36	AD9	B	985	1033	Right-handed alpha
Helix 37	AE1	C	294	304	Right-handed alpha
Helix 38	AE2	C	337	343	Right-handed alpha
Helix 39	AE3	C	364	371	Right-handed alpha
Helix 40	AE4	C	383	389	Right-handed 310
Helix 41	AE5	C	403	410	Right-handed 310
Helix 42	AE6	C	417	423	Right-handed alpha
Helix 43	AE7	C	616	620	Right-handed 310
Helix 44	AE8	C	737	744	Right-handed alpha
Helix 45	AE9	C	746	756	Right-handed alpha
Helix 46	AF1	C	758	783	Right-handed alpha
Helix 47	AF2	C	816	826	Right-handed alpha
Helix 48	AF3	C	866	884	Right-handed alpha
Helix 49	AF4	C	885	891	Right-handed 310
Helix 50	AF5	C	897	909	Right-handed alpha
Helix 51	AF6	C	913	941	Right-handed alpha
Helix 52	AF7	C	942	944	Right-handed 310
Helix 53	AF8	C	945	965	Right-handed alpha
Helix 54	AF9	C	966	968	Right-handed 310
Helix 55	AG1	C	976	984	Right-handed alpha
Helix 56	AG2	C	985	1034	Right-handed alpha
Helix 57	AG3	D	29	37	Right-handed 310
Helix 58	AG4	D	95	99	Right-handed 310
Helix 59	AG5	E	95	99	Right-handed 310

There are 50 sheets in PDB entry 8YZ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	64	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	238	anti-parallel
Strand 3	A	106	107	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	190	191	anti-parallel
Strand 3	A	206	207	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	121	first strand
Strand 2	A	126	131	anti-parallel
Strand 3	A	169	170	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	200	204	anti-parallel
Strand 3	A	225	229	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	319	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	610	612	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	643	645	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	395	398	anti-parallel
Strand 3	A	510	514	anti-parallel
Strand 4	A	431	435	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	540	first strand
Strand 2	A	549	554	anti-parallel
Strand 3	A	584	588	anti-parallel
Strand 4	A	573	577	anti-parallel
Strand 5	A	566	567	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	693	696	parallel
Strand 3	A	670	672	anti-parallel
Strand 4	A	664	665	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	704	first strand
Strand 2	B	787	790	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	1074	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	727	first strand
Strand 2	A	1059	1070	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	789	first strand
Strand 2	C	701	703	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1088	1089	first strand
Strand 2	A	1121	1122	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	63	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	195	first strand
Strand 2	B	89	94	anti-parallel
Strand 3	B	266	267	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	117	121	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	168	171	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	205	first strand
Strand 2	B	224	229	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	318	first strand
Strand 2	B	593	599	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	649	651	anti-parallel
Strand 5	B	642	644	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	589	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel
Strand 7	C	42	43	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	693	696	parallel
Strand 3	B	670	673	anti-parallel
Strand 4	B	665	667	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1053	1056	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1047	1050	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1086	1088	first strand
Strand 2	B	1081	1083	anti-parallel
Strand 3	B	1133	1134	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	277	279	anti-parallel
Strand 3	C	285	287	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	271	274	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	237	241	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	116	120	anti-parallel
Strand 5	C	127	132	anti-parallel
Strand 6	C	165	168	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	193	197	anti-parallel
Strand 3	C	200	205	anti-parallel
Strand 4	C	224	229	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	264	265	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	318	first strand
Strand 2	C	593	599	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	328	first strand
Strand 2	C	539	543	parallel
Strand 3	C	547	550	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	431	437	anti-parallel
Strand 3	C	508	514	anti-parallel
Strand 4	C	399	401	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	552	554	first strand
Strand 2	C	584	587	anti-parallel
Strand 3	C	575	577	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	610	611	first strand
Strand 2	C	649	651	anti-parallel
Strand 3	C	643	644	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	655	656	first strand
Strand 2	C	693	696	parallel
Strand 3	C	670	673	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	721	first strand
Strand 2	C	1059	1077	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	728	first strand
Strand 2	C	1059	1077	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel
Strand 5	C	1113	1114	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1081	1083	first strand
Strand 2	C	1086	1089	anti-parallel
Strand 3	C	1121	1122	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	77	80	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	122	126	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	38	44	anti-parallel
Strand 5	D	50	56	anti-parallel
Strand 6	D	65	67	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	122	126	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	115	118	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	29	anti-parallel
Strand 3	E	76	91	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	122	126	parallel
Strand 3	E	101	102	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	67	first strand
Strand 2	E	51	55	anti-parallel
Strand 3	E	39	43	anti-parallel
Strand 4	E	104	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YZ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZ6