Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YZD entry

There are 2 chains in PDB entry 8YZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 333LYS 528
B
 SER 19ASP 615
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8YZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
338 343Right-handed alpha
Helix 2
AA2
A
367 372Right-handed alpha
Helix 3
AA3
A
417 422Right-handed alpha
Helix 4
AA4
B
20 53Right-handed alpha
Helix 5
AA5
B
55 77Right-handed alpha
Helix 6
AA6
B
79 83Right-handed 310
Helix 7
AA7
B
84 88Right-handed 310
Helix 8
AA8
B
90 101Right-handed alpha
Helix 9
AA9
B
104 108Right-handed 310
Helix 10
AB1
B
109 129Right-handed alpha
Helix 11
AB2
B
147 154Right-handed alpha
Helix 12
AB3
B
157 172Right-handed alpha
Helix 13
AB4
B
176 194Right-handed alpha
Helix 14
AB5
B
198 205Right-handed alpha
Helix 15
AB6
B
206 208Right-handed 310
Helix 16
AB7
B
220 252Right-handed alpha
Helix 17
AB8
B
265 267Right-handed 310
Helix 18
AB9
B
275 279Right-handed 310
Helix 19
AC1
B
293 301Right-handed alpha
Helix 20
AC2
B
303 318Right-handed alpha
Helix 21
AC3
B
324 331Right-handed alpha
Helix 22
AC4
B
365 385Right-handed alpha
Helix 23
AC5
B
389 393Right-handed 310
Helix 24
AC6
B
397 399Right-handed 310
Helix 25
AC7
B
400 413Right-handed alpha
Helix 26
AC8
B
414 421Right-handed alpha
Helix 27
AC9
B
431 447Right-handed alpha
Helix 28
AD1
B
449 466Right-handed alpha
Helix 29
AD2
B
469 471Right-handed 310
Helix 30
AD3
B
472 485Right-handed alpha
Helix 31
AD4
B
498 502Right-handed 310
Helix 32
AD5
B
503 508Right-handed alpha
Helix 33
AD6
B
512 533Right-handed alpha
Helix 34
AD7
B
547 559Right-handed alpha
Helix 35
AD8
B
565 575Right-handed alpha
Helix 36
AD9
B
581 600Right-handed alpha
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There are 7 sheets in PDB entry 8YZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
394 402anti-parallel
Strand 3
A
508 516anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
524 525parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
141 142anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
487 488parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 350first strand
Strand 2
B
356 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il