Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YZI entry

There are 4 chains in PDB entry 8YZI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 304	THR 418
A	GLU 304	THR 418
B	LYS 75	SER 974
D	LYS 75	SER 974

There are 81 helices in PDB entry 8YZI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	364	371	Right-handed 310
Helix 2	AA2	A	364	371	Right-handed 310
Helix 3	AA3	B	75	79	Right-handed 310
Helix 4	AA4	B	282	286	Right-handed 310
Helix 5	AA5	B	311	317	Right-handed alpha
Helix 6	AA6	B	320	338	Right-handed alpha
Helix 7	AA7	B	371	373	Right-handed 310
Helix 8	AA8	B	381	401	Right-handed alpha
Helix 9	AA9	B	409	412	Right-handed 310
Helix 10	AB1	B	413	432	Right-handed alpha
Helix 11	AB2	B	433	439	Right-handed 310
Helix 12	AB3	B	440	450	Right-handed alpha
Helix 13	AB4	B	470	477	Right-handed alpha
Helix 14	AB5	B	479	497	Right-handed alpha
Helix 15	AB6	B	498	513	Right-handed alpha
Helix 16	AB7	B	519	534	Right-handed alpha
Helix 17	AB8	B	542	553	Right-handed alpha
Helix 18	AB9	B	618	621	Right-handed 310
Helix 19	AC1	B	632	635	Right-handed 310
Helix 20	AC2	B	643	657	Right-handed alpha
Helix 21	AC3	B	662	679	Right-handed alpha
Helix 22	AC4	B	683	690	Right-handed alpha
Helix 23	AC5	B	691	697	Right-handed 310
Helix 24	AC6	B	700	717	Right-handed alpha
Helix 25	AC7	B	722	746	Right-handed alpha
Helix 26	AC8	B	754	772	Right-handed alpha
Helix 27	AC9	B	773	789	Right-handed alpha
Helix 28	AD1	B	797	799	Right-handed 310
Helix 29	AD2	B	800	812	Right-handed alpha
Helix 30	AD3	B	813	827	Right-handed alpha
Helix 31	AD4	B	829	841	Right-handed alpha
Helix 32	AD5	B	845	856	Right-handed alpha
Helix 33	AD6	B	866	874	Right-handed alpha
Helix 34	AD7	B	875	877	Right-handed 310
Helix 35	AD8	B	879	891	Right-handed alpha
Helix 36	AD9	B	891	900	Right-handed alpha
Helix 37	AE1	B	907	914	Right-handed alpha
Helix 38	AE2	B	919	932	Right-handed alpha
Helix 39	AE3	B	938	940	Right-handed 310
Helix 40	AE4	B	941	961	Right-handed alpha
Helix 41	AE5	B	962	973	Right-handed alpha
Helix 42	AE6	D	75	79	Right-handed 310
Helix 43	AE7	D	282	286	Right-handed 310
Helix 44	AE8	D	311	317	Right-handed alpha
Helix 45	AE9	D	320	339	Right-handed alpha
Helix 46	AF1	D	370	374	Right-handed alpha
Helix 47	AF2	D	381	398	Right-handed alpha
Helix 48	AF3	D	409	412	Right-handed 310
Helix 49	AF4	D	413	432	Right-handed alpha
Helix 50	AF5	D	433	439	Right-handed 310
Helix 51	AF6	D	440	454	Right-handed alpha
Helix 52	AF7	D	464	468	Right-handed 310
Helix 53	AF8	D	470	477	Right-handed alpha
Helix 54	AF9	D	479	497	Right-handed alpha
Helix 55	AG1	D	498	513	Right-handed alpha
Helix 56	AG2	D	519	535	Right-handed alpha
Helix 57	AG3	D	542	552	Right-handed alpha
Helix 58	AG4	D	618	621	Right-handed 310
Helix 59	AG5	D	632	635	Right-handed 310
Helix 60	AG6	D	643	657	Right-handed alpha
Helix 61	AG7	D	662	679	Right-handed alpha
Helix 62	AG8	D	683	690	Right-handed alpha
Helix 63	AG9	D	691	692	Right-handed 310
Helix 64	AH1	D	693	697	Right-handed 310
Helix 65	AH2	D	699	717	Right-handed alpha
Helix 66	AH3	D	722	745	Right-handed alpha
Helix 67	AH4	D	754	771	Right-handed alpha
Helix 68	AH5	D	773	790	Right-handed alpha
Helix 69	AH6	D	797	799	Right-handed 310
Helix 70	AH7	D	800	811	Right-handed alpha
Helix 71	AH8	D	813	827	Right-handed alpha
Helix 72	AH9	D	829	841	Right-handed alpha
Helix 73	AI1	D	845	855	Right-handed alpha
Helix 74	AI2	D	856	858	Right-handed 310
Helix 75	AI3	D	866	877	Right-handed alpha
Helix 76	AI4	D	879	891	Right-handed alpha
Helix 77	AI5	D	891	899	Right-handed alpha
Helix 78	AI6	D	905	914	Right-handed alpha
Helix 79	AI7	D	919	933	Right-handed alpha
Helix 80	AI8	D	938	940	Right-handed 310
Helix 81	AI9	D	941	974	Right-handed alpha

There are 24 sheets in PDB entry 8YZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	328	first strand
Strand 2	C	305	316	anti-parallel
Strand 3	C	340	347	parallel
Strand 4	C	404	416	parallel
Strand 5	C	386	393	anti-parallel
Strand 6	C	353	357	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	373	380	anti-parallel
Strand 3	C	404	416	anti-parallel
Strand 4	C	386	393	anti-parallel
Strand 5	C	397	399	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	328	first strand
Strand 2	A	305	317	anti-parallel
Strand 3	A	340	350	parallel
Strand 4	A	405	416	parallel
Strand 5	A	386	393	anti-parallel
Strand 6	A	353	358	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	335	first strand
Strand 2	A	373	380	anti-parallel
Strand 3	A	405	416	anti-parallel
Strand 4	A	386	393	anti-parallel
Strand 5	A	397	399	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	180	191	anti-parallel
Strand 3	B	144	147	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	180	191	anti-parallel
Strand 3	B	108	119	anti-parallel
Strand 4	B	86	97	anti-parallel
Strand 5	B	239	246	parallel
Strand 6	B	270	274	anti-parallel
Strand 7	B	262	263	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	156	162	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	206	first strand
Strand 2	B	209	217	anti-parallel
Strand 3	B	289	291	anti-parallel
Strand 4	B	250	252	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	299	first strand
Strand 2	B	305	310	anti-parallel
Strand 3	B	346	352	parallel
Strand 4	B	365	369	parallel
Strand 5	B	359	360	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	516	518	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	616	first strand
Strand 2	B	567	572	anti-parallel
Strand 3	B	557	562	anti-parallel
Strand 4	B	639	641	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	595	first strand
Strand 2	B	607	609	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	603	first strand
Strand 2	B	597	599	anti-parallel
Strand 3	B	628	630	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	181	191	anti-parallel
Strand 3	D	144	148	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	181	191	anti-parallel
Strand 3	D	108	119	anti-parallel
Strand 4	D	86	97	anti-parallel
Strand 5	D	238	246	parallel
Strand 6	D	270	274	anti-parallel
Strand 7	D	262	263	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	129	first strand
Strand 2	D	167	172	anti-parallel
Strand 3	D	156	162	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	215	217	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	206	first strand
Strand 2	D	209	212	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	252	first strand
Strand 2	D	289	291	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	299	first strand
Strand 2	D	305	310	anti-parallel
Strand 3	D	346	352	parallel
Strand 4	D	365	369	parallel
Strand 5	D	359	360	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	516	518	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	614	616	first strand
Strand 2	D	567	572	anti-parallel
Strand 3	D	557	562	anti-parallel
Strand 4	D	639	641	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	593	595	first strand
Strand 2	D	607	609	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	602	603	first strand
Strand 2	D	597	599	anti-parallel
Strand 3	D	628	630	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YZI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZI