Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YZK entry

There are 4 chains in PDB entry 8YZK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 5	SER 268
C	PHE 37	SER 288
D	PHE 37	SER 288
B	CYS 5	SER 268

There are 26 helices in PDB entry 8YZK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	51	Right-handed alpha
Helix 2	AA2	A	53	58	Right-handed alpha
Helix 3	AA3	A	59	79	Right-handed alpha
Helix 4	AA4	A	90	119	Right-handed alpha
Helix 5	AA5	A	125	153	Right-handed alpha
Helix 6	AA6	A	157	161	Right-handed 310
Helix 7	AA7	A	162	167	Right-handed alpha
Helix 8	AA8	A	167	191	Right-handed alpha
Helix 9	AA9	A	199	232	Right-handed alpha
Helix 10	AB1	A	238	257	Right-handed alpha
Helix 11	AB2	A	257	265	Right-handed alpha
Helix 12	AB3	C	64	68	Right-handed 310
Helix 13	AB4	C	197	201	Right-handed 310
Helix 14	AB5	D	197	201	Right-handed 310
Helix 15	AB6	D	256	260	Right-handed 310
Helix 16	AB7	B	23	51	Right-handed alpha
Helix 17	AB8	B	53	58	Right-handed alpha
Helix 18	AB9	B	59	79	Right-handed alpha
Helix 19	AC1	B	90	119	Right-handed alpha
Helix 20	AC2	B	125	153	Right-handed alpha
Helix 21	AC3	B	157	161	Right-handed 310
Helix 22	AC4	B	162	167	Right-handed alpha
Helix 23	AC5	B	167	191	Right-handed alpha
Helix 24	AC6	B	199	232	Right-handed alpha
Helix 25	AC7	B	238	257	Right-handed alpha
Helix 26	AC8	B	257	265	Right-handed alpha

There are 9 sheets in PDB entry 8YZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	74	first strand
Strand 2	C	82	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	136	137	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	176	first strand
Strand 2	C	187	194	anti-parallel
Strand 3	C	247	252	anti-parallel
Strand 4	C	237	242	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	216	first strand
Strand 2	C	203	209	anti-parallel
Strand 3	C	261	268	anti-parallel
Strand 4	C	275	278	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	216	first strand
Strand 2	C	203	209	anti-parallel
Strand 3	C	261	268	anti-parallel
Strand 4	C	283	284	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	86	first strand
Strand 2	D	71	74	anti-parallel
Strand 3	D	125	128	anti-parallel
Strand 4	D	136	137	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	176	first strand
Strand 2	D	186	194	anti-parallel
Strand 3	D	247	253	anti-parallel
Strand 4	D	237	242	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	216	first strand
Strand 2	D	203	209	anti-parallel
Strand 3	D	261	268	anti-parallel
Strand 4	D	275	278	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	216	first strand
Strand 2	D	203	209	anti-parallel
Strand 3	D	261	268	anti-parallel
Strand 4	D	283	284	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YZK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZK