Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YZN entry

There is 1 chain in PDB entry 8YZN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 51HIS 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8YZN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 109Right-handed alpha
Helix 2
AA2
A
133 151Right-handed alpha
Helix 3
AA3
A
164 177Right-handed alpha
Helix 4
AA4
A
191 196Right-handed alpha
Helix 5
AA5
A
203 218Right-handed alpha
Helix 6
AA6
A
221 233Right-handed alpha
Helix 7
AA7
A
235 244Right-handed alpha
Helix 8
AA8
A
245 254Right-handed 310
Helix 9
AA9
A
255 263Right-handed alpha
Helix 10
AB1
A
278 289Right-handed alpha
Helix 11
AB2
A
308 312Right-handed 310
Helix 12
AB3
A
315 331Right-handed alpha
Helix 13
AB4
A
335 339Right-handed 310
Helix 14
AB5
A
357 362Right-handed 310
Helix 15
AB6
A
426 428Right-handed 310
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There are 5 sheets in PDB entry 8YZN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 62first strand
Strand 2
A
68 76anti-parallel
Strand 3
A
113 117anti-parallel
Strand 4
A
84 90parallel
Strand 5
A
153 163parallel
Strand 6
A
180 186parallel
Strand 7
A
265 271parallel
Strand 8
A
293 298parallel
Strand 9
A
342 345parallel
Strand 10
A
351 354anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
201 202anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 396first strand
Strand 2
A
537 541anti-parallel
Strand 3
A
452 459anti-parallel
Strand 4
A
549 552anti-parallel
Strand 5
A
365 369anti-parallel
Strand 6
A
380 384anti-parallel
Strand 7
A
434 437parallel
Strand 8
A
515 522anti-parallel
Strand 9
A
464 474anti-parallel
Strand 10
A
478 489anti-parallel
Strand 11
A
423 424anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 396first strand
Strand 2
A
537 541anti-parallel
Strand 3
A
452 459anti-parallel
Strand 4
A
498 503anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 511first strand
Strand 2
A
445 449anti-parallel
Strand 3
A
554 555anti-parallel
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