Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YZQ entry

There are 8 chains in PDB entry 8YZQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 7	VAL 278
B	ASN 6	VAL 278
C	GLU 4	VAL 278
D	ASN 6	VAL 278
E	THR 5	VAL 278
F	ASN 6	VAL 278
G	THR 5	VAL 278
H	TYR 7	VAL 278

There are 10 helices in PDB entry 8YZQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	121	125	Right-handed 310
Helix 2	AA2	A	197	200	Right-handed 310
Helix 3	AA3	B	121	125	Right-handed 310
Helix 4	AA4	C	121	125	Right-handed 310
Helix 5	AA5	D	121	125	Right-handed 310
Helix 6	AA6	E	121	125	Right-handed 310
Helix 7	AA7	F	121	125	Right-handed 310
Helix 8	AA8	G	121	125	Right-handed 310
Helix 9	AA9	H	121	125	Right-handed 310
Helix 10	AB1	H	197	200	Right-handed 310

There are 39 sheets in PDB entry 8YZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	127	132	anti-parallel
Strand 3	A	37	43	anti-parallel
Strand 4	A	54	61	anti-parallel
Strand 5	A	66	73	anti-parallel
Strand 6	A	76	77	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	127	132	anti-parallel
Strand 3	A	37	43	anti-parallel
Strand 4	A	54	61	anti-parallel
Strand 5	A	66	73	anti-parallel
Strand 6	A	81	84	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	117	first strand
Strand 2	A	103	108	anti-parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	24	30	anti-parallel
Strand 5	A	135	142	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	261	268	anti-parallel
Strand 3	A	178	184	anti-parallel
Strand 4	A	189	196	anti-parallel
Strand 5	A	201	208	anti-parallel
Strand 6	A	211	212	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	253	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	229	235	anti-parallel
Strand 4	A	164	171	anti-parallel
Strand 5	A	270	278	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	127	132	anti-parallel
Strand 3	B	37	43	anti-parallel
Strand 4	B	54	61	anti-parallel
Strand 5	B	66	72	anti-parallel
Strand 6	B	81	84	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	117	first strand
Strand 2	B	103	108	anti-parallel
Strand 3	B	93	99	anti-parallel
Strand 4	B	24	30	anti-parallel
Strand 5	B	135	142	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	261	268	anti-parallel
Strand 3	B	178	184	anti-parallel
Strand 4	B	189	196	anti-parallel
Strand 5	B	201	208	anti-parallel
Strand 6	B	211	212	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	253	first strand
Strand 2	B	239	244	anti-parallel
Strand 3	B	229	235	anti-parallel
Strand 4	B	164	171	anti-parallel
Strand 5	B	270	277	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	127	132	anti-parallel
Strand 3	C	37	43	anti-parallel
Strand 4	C	54	61	anti-parallel
Strand 5	C	66	73	anti-parallel
Strand 6	C	76	77	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	127	132	anti-parallel
Strand 3	C	37	43	anti-parallel
Strand 4	C	54	61	anti-parallel
Strand 5	C	66	73	anti-parallel
Strand 6	C	81	84	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	117	first strand
Strand 2	C	103	108	anti-parallel
Strand 3	C	93	99	anti-parallel
Strand 4	C	24	30	anti-parallel
Strand 5	C	135	142	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	261	268	anti-parallel
Strand 3	C	178	184	anti-parallel
Strand 4	C	189	196	anti-parallel
Strand 5	C	201	208	anti-parallel
Strand 6	C	211	212	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	253	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	229	235	anti-parallel
Strand 4	C	164	171	anti-parallel
Strand 5	C	270	278	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	127	132	anti-parallel
Strand 3	D	37	43	anti-parallel
Strand 4	D	54	61	anti-parallel
Strand 5	D	66	73	anti-parallel
Strand 6	D	76	77	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	127	132	anti-parallel
Strand 3	D	37	43	anti-parallel
Strand 4	D	54	61	anti-parallel
Strand 5	D	66	73	anti-parallel
Strand 6	D	81	84	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	117	first strand
Strand 2	D	103	108	anti-parallel
Strand 3	D	93	99	anti-parallel
Strand 4	D	24	30	anti-parallel
Strand 5	D	135	142	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	263	268	anti-parallel
Strand 3	D	178	183	anti-parallel
Strand 4	D	189	196	anti-parallel
Strand 5	D	201	208	anti-parallel
Strand 6	D	211	212	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	253	first strand
Strand 2	D	239	244	anti-parallel
Strand 3	D	229	235	anti-parallel
Strand 4	D	163	171	anti-parallel
Strand 5	D	270	277	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	127	132	anti-parallel
Strand 3	E	37	43	anti-parallel
Strand 4	E	54	61	anti-parallel
Strand 5	E	66	73	anti-parallel
Strand 6	E	76	77	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	127	132	anti-parallel
Strand 3	E	37	43	anti-parallel
Strand 4	E	54	61	anti-parallel
Strand 5	E	66	73	anti-parallel
Strand 6	E	81	84	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	117	first strand
Strand 2	E	103	108	anti-parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	24	30	anti-parallel
Strand 5	E	135	142	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	153	first strand
Strand 2	E	261	268	anti-parallel
Strand 3	E	178	184	anti-parallel
Strand 4	E	189	196	anti-parallel
Strand 5	E	201	208	anti-parallel
Strand 6	E	211	212	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	253	first strand
Strand 2	E	239	244	anti-parallel
Strand 3	E	229	235	anti-parallel
Strand 4	E	164	171	anti-parallel
Strand 5	E	270	278	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	127	132	anti-parallel
Strand 3	F	37	43	anti-parallel
Strand 4	F	54	61	anti-parallel
Strand 5	F	66	73	anti-parallel
Strand 6	F	76	77	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	127	132	anti-parallel
Strand 3	F	37	43	anti-parallel
Strand 4	F	54	61	anti-parallel
Strand 5	F	66	73	anti-parallel
Strand 6	F	81	84	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	117	first strand
Strand 2	F	103	108	anti-parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	24	30	anti-parallel
Strand 5	F	135	142	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	153	first strand
Strand 2	F	261	268	anti-parallel
Strand 3	F	178	184	anti-parallel
Strand 4	F	189	196	anti-parallel
Strand 5	F	201	208	anti-parallel
Strand 6	F	211	212	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	253	first strand
Strand 2	F	239	244	anti-parallel
Strand 3	F	229	235	anti-parallel
Strand 4	F	164	171	anti-parallel
Strand 5	F	270	278	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	127	132	anti-parallel
Strand 3	G	37	43	anti-parallel
Strand 4	G	54	61	anti-parallel
Strand 5	G	66	73	anti-parallel
Strand 6	G	76	77	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	127	132	anti-parallel
Strand 3	G	37	43	anti-parallel
Strand 4	G	54	61	anti-parallel
Strand 5	G	66	73	anti-parallel
Strand 6	G	81	84	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	111	117	first strand
Strand 2	G	103	108	anti-parallel
Strand 3	G	93	99	anti-parallel
Strand 4	G	24	30	anti-parallel
Strand 5	G	135	142	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	153	first strand
Strand 2	G	263	268	anti-parallel
Strand 3	G	178	183	anti-parallel
Strand 4	G	189	196	anti-parallel
Strand 5	G	201	208	anti-parallel
Strand 6	G	211	212	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	247	253	first strand
Strand 2	G	239	244	anti-parallel
Strand 3	G	229	235	anti-parallel
Strand 4	G	164	171	anti-parallel
Strand 5	G	270	277	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	127	132	anti-parallel
Strand 3	H	37	43	anti-parallel
Strand 4	H	54	61	anti-parallel
Strand 5	H	66	73	anti-parallel
Strand 6	H	76	77	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	127	132	anti-parallel
Strand 3	H	37	43	anti-parallel
Strand 4	H	54	61	anti-parallel
Strand 5	H	66	73	anti-parallel
Strand 6	H	81	84	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	117	first strand
Strand 2	H	103	108	anti-parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	24	30	anti-parallel
Strand 5	H	135	142	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	153	first strand
Strand 2	H	261	268	anti-parallel
Strand 3	H	178	184	anti-parallel
Strand 4	H	189	196	anti-parallel
Strand 5	H	201	208	anti-parallel
Strand 6	H	211	212	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	247	253	first strand
Strand 2	H	239	244	anti-parallel
Strand 3	H	229	235	anti-parallel
Strand 4	H	163	171	anti-parallel
Strand 5	H	270	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YZQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZQ