Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YZS entry

There are 8 chains in PDB entry 8YZS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 345PRO 477
B
 ASN 349PRO 477
C
 ILE 348SER 474
D
 ILE 348VAL 470
E
 T 1 A 11
F
 T 1 A 11
G
 T 1 A 11
H
 T 1 A 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8YZS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
356 360Right-handed 310
Helix 2
AA2
A
381 392Right-handed alpha
Helix 3
AA3
A
394 407Right-handed alpha
Helix 4
AA4
A
408 414Right-handed alpha
Helix 5
AA5
A
433 448Right-handed alpha
Helix 6
AA6
A
452 471Right-handed alpha
Helix 7
AA7
B
356 360Right-handed 310
Helix 8
AA8
B
381 392Right-handed alpha
Helix 9
AA9
B
394 407Right-handed alpha
Helix 10
AB1
B
408 414Right-handed alpha
Helix 11
AB2
B
433 448Right-handed alpha
Helix 12
AB3
B
452 471Right-handed alpha
Helix 13
AB4
C
381 392Right-handed alpha
Helix 14
AB5
C
394 407Right-handed alpha
Helix 15
AB6
C
408 415Right-handed alpha
Helix 16
AB7
C
433 448Right-handed alpha
Helix 17
AB8
C
452 473Right-handed alpha
Helix 18
AB9
D
381 392Right-handed alpha
Helix 19
AC1
D
394 407Right-handed alpha
Helix 20
AC2
D
408 414Right-handed alpha
Helix 21
AC3
D
433 448Right-handed alpha
Helix 22
AC4
D
452 470Right-handed alpha
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There are 4 sheets in PDB entry 8YZS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
378 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
378 380anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
368 370first strand
Strand 2
C
378 380anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
368 370first strand
Strand 2
D
378 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il