Analysis of interatomic Contacts of Structural Units in PDB entry:
8YZT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YZT entry

There are 6 chains in PDB entry 8YZT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 205ARG 324
B
 ILE 205ARG 324
C
 ILE 205GLY 325
D
 LEU 207ARG 324
E
 C 0 T 12
F
 C 0 T 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8YZT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
209 213Right-handed 310
Helix 2
AA2
A
224 226Right-handed 310
Helix 3
AA3
A
234 244Right-handed alpha
Helix 4
AA4
A
247 260Right-handed alpha
Helix 5
AA5
A
261 267Right-handed alpha
Helix 6
AA6
A
282 297Right-handed alpha
Helix 7
AA7
A
300 324Right-handed alpha
Helix 8
AA8
B
209 213Right-handed 310
Helix 9
AA9
B
224 226Right-handed 310
Helix 10
AB1
B
234 245Right-handed alpha
Helix 11
AB2
B
247 260Right-handed alpha
Helix 12
AB3
B
261 267Right-handed alpha
Helix 13
AB4
B
282 298Right-handed alpha
Helix 14
AB5
B
300 323Right-handed alpha
Helix 15
AB6
C
209 213Right-handed 310
Helix 16
AB7
C
234 245Right-handed alpha
Helix 17
AB8
C
247 260Right-handed alpha
Helix 18
AB9
C
261 267Right-handed alpha
Helix 19
AC1
C
282 298Right-handed alpha
Helix 20
AC2
C
300 323Right-handed alpha
Helix 21
AC3
D
209 213Right-handed 310
Helix 22
AC4
D
234 245Right-handed alpha
Helix 23
AC5
D
247 260Right-handed alpha
Helix 24
AC6
D
261 267Right-handed alpha
Helix 25
AC7
D
282 298Right-handed alpha
Helix 26
AC8
D
300 323Right-handed alpha
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There are 8 sheets in PDB entry 8YZT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
228 231anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
279 280parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
228 231anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
279 280parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 220first strand
Strand 2
C
228 231anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 269first strand
Strand 2
C
279 280parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
217 220first strand
Strand 2
D
228 231anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
268 269first strand
Strand 2
D
279 280parallel
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