Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z0H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z0H entry

There are 12 chains in PDB entry 8Z0H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	PRO 272
B	LEU 1	PHE 97
D	MET 0	PRO 272
E	LEU 1	PHE 97
G	MET 0	PRO 272
H	LEU 1	PHE 97
J	MET 0	PRO 272
K	LEU 1	PHE 97
I	SER 301	VAL 309
C	SER 301	VAL 309
F	SER 301	VAL 309
L	SER 301	VAL 309

There are 32 helices in PDB entry 8Z0H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	54	Right-handed alpha
Helix 2	AA2	A	55	84	Right-handed alpha
Helix 3	AA3	A	134	136	Right-handed 310
Helix 4	AA4	A	137	147	Right-handed alpha
Helix 5	AA5	A	149	159	Right-handed alpha
Helix 6	AA6	A	159	172	Right-handed alpha
Helix 7	AA7	A	172	177	Right-handed alpha
Helix 8	AA8	A	249	251	Right-handed 310
Helix 9	AA9	D	47	54	Right-handed alpha
Helix 10	AB1	D	55	84	Right-handed alpha
Helix 11	AB2	D	134	136	Right-handed 310
Helix 12	AB3	D	137	147	Right-handed alpha
Helix 13	AB4	D	149	159	Right-handed alpha
Helix 14	AB5	D	159	172	Right-handed alpha
Helix 15	AB6	D	172	177	Right-handed alpha
Helix 16	AB7	D	249	251	Right-handed 310
Helix 17	AB8	G	47	54	Right-handed alpha
Helix 18	AB9	G	55	84	Right-handed alpha
Helix 19	AC1	G	134	136	Right-handed 310
Helix 20	AC2	G	137	147	Right-handed alpha
Helix 21	AC3	G	149	159	Right-handed alpha
Helix 22	AC4	G	159	172	Right-handed alpha
Helix 23	AC5	G	172	177	Right-handed alpha
Helix 24	AC6	G	249	251	Right-handed 310
Helix 25	AC7	J	47	54	Right-handed alpha
Helix 26	AC8	J	55	84	Right-handed alpha
Helix 27	AC9	J	134	136	Right-handed 310
Helix 28	AD1	J	137	147	Right-handed alpha
Helix 29	AD2	J	149	159	Right-handed alpha
Helix 30	AD3	J	159	172	Right-handed alpha
Helix 31	AD4	J	172	178	Right-handed alpha
Helix 32	AD5	J	249	251	Right-handed 310

There are 24 sheets in PDB entry 8Z0H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	22	28	anti-parallel
Strand 4	A	2	12	anti-parallel
Strand 5	A	92	102	anti-parallel
Strand 6	A	105	115	anti-parallel
Strand 7	A	118	124	anti-parallel
Strand 8	A	129	132	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	191	first strand
Strand 2	A	194	204	anti-parallel
Strand 3	A	237	245	anti-parallel
Strand 4	A	224	231	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	253	258	anti-parallel
Strand 4	A	266	268	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	B	19	28	anti-parallel
Strand 3	B	60	68	anti-parallel
Strand 4	B	48	49	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	B	19	28	anti-parallel
Strand 3	B	60	68	anti-parallel
Strand 4	B	53	54	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	76	81	anti-parallel
Strand 4	B	89	92	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	31	37	anti-parallel
Strand 3	D	22	28	anti-parallel
Strand 4	D	2	12	anti-parallel
Strand 5	D	92	102	anti-parallel
Strand 6	D	105	115	anti-parallel
Strand 7	D	118	124	anti-parallel
Strand 8	D	129	132	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	191	first strand
Strand 2	D	194	204	anti-parallel
Strand 3	D	237	245	anti-parallel
Strand 4	D	224	231	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	219	first strand
Strand 2	D	210	215	anti-parallel
Strand 3	D	253	258	anti-parallel
Strand 4	D	266	268	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	9	first strand
Strand 2	E	19	28	anti-parallel
Strand 3	E	60	68	anti-parallel
Strand 4	E	48	49	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	9	first strand
Strand 2	E	19	28	anti-parallel
Strand 3	E	60	68	anti-parallel
Strand 4	E	53	54	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	43	first strand
Strand 2	E	34	39	anti-parallel
Strand 3	E	76	81	anti-parallel
Strand 4	E	89	92	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	45	first strand
Strand 2	G	31	37	anti-parallel
Strand 3	G	22	28	anti-parallel
Strand 4	G	2	12	anti-parallel
Strand 5	G	92	102	anti-parallel
Strand 6	G	105	115	anti-parallel
Strand 7	G	118	124	anti-parallel
Strand 8	G	129	130	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	191	first strand
Strand 2	G	194	204	anti-parallel
Strand 3	G	237	245	anti-parallel
Strand 4	G	224	231	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	218	219	first strand
Strand 2	G	210	215	anti-parallel
Strand 3	G	253	258	anti-parallel
Strand 4	G	266	268	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	9	first strand
Strand 2	H	19	28	anti-parallel
Strand 3	H	60	68	anti-parallel
Strand 4	H	48	49	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	9	first strand
Strand 2	H	19	28	anti-parallel
Strand 3	H	60	68	anti-parallel
Strand 4	H	53	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	43	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	89	92	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	45	first strand
Strand 2	J	31	37	anti-parallel
Strand 3	J	22	28	anti-parallel
Strand 4	J	2	12	anti-parallel
Strand 5	J	92	102	anti-parallel
Strand 6	J	105	115	anti-parallel
Strand 7	J	118	124	anti-parallel
Strand 8	J	129	132	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	183	191	first strand
Strand 2	J	194	204	anti-parallel
Strand 3	J	237	245	anti-parallel
Strand 4	J	224	231	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	218	219	first strand
Strand 2	J	210	215	anti-parallel
Strand 3	J	253	258	anti-parallel
Strand 4	J	266	268	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	9	first strand
Strand 2	K	19	28	anti-parallel
Strand 3	K	60	68	anti-parallel
Strand 4	K	48	49	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	9	first strand
Strand 2	K	19	28	anti-parallel
Strand 3	K	60	68	anti-parallel
Strand 4	K	53	54	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	43	first strand
Strand 2	K	34	39	anti-parallel
Strand 3	K	76	81	anti-parallel
Strand 4	K	89	92	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z0H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z0H