Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z0J entry

There are 2 chains in PDB entry 8Z0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 62LYS 790
B
 HIS 62LYS 790
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8Z0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 114Right-handed alpha
Helix 2
AA2
A
157 167Right-handed alpha
Helix 3
AA3
A
172 187Right-handed alpha
Helix 4
AA4
A
202 212Right-handed alpha
Helix 5
AA5
A
230 239Right-handed alpha
Helix 6
AA6
A
239 244Right-handed alpha
Helix 7
AA7
A
258 265Right-handed 310
Helix 8
AA8
A
281 286Right-handed alpha
Helix 9
AA9
A
391 397Right-handed alpha
Helix 10
AB1
A
400 405Right-handed alpha
Helix 11
AB2
A
408 416Right-handed alpha
Helix 12
AB3
A
417 430Right-handed alpha
Helix 13
AB4
A
466 472Right-handed alpha
Helix 14
AB5
A
487 497Right-handed alpha
Helix 15
AB6
A
509 521Right-handed alpha
Helix 16
AB7
A
522 524Right-handed 310
Helix 17
AB8
A
525 530Right-handed alpha
Helix 18
AB9
A
544 566Right-handed alpha
Helix 19
AC1
A
593 614Right-handed alpha
Helix 20
AC2
A
627 633Right-handed alpha
Helix 21
AC3
A
636 665Right-handed alpha
Helix 22
AC4
A
674 700Right-handed alpha
Helix 23
AC5
A
703 712Right-handed alpha
Helix 24
AC6
A
714 719Right-handed alpha
Helix 25
AC7
A
731 739Right-handed alpha
Helix 26
AC8
A
743 755Right-handed alpha
Helix 27
AC9
A
765 789Right-handed alpha
Helix 28
AD1
B
106 114Right-handed alpha
Helix 29
AD2
B
157 165Right-handed alpha
Helix 30
AD3
B
172 187Right-handed alpha
Helix 31
AD4
B
202 212Right-handed alpha
Helix 32
AD5
B
230 245Right-handed alpha
Helix 33
AD6
B
259 265Right-handed 310
Helix 34
AD7
B
281 286Right-handed alpha
Helix 35
AD8
B
391 397Right-handed alpha
Helix 36
AD9
B
398 407Right-handed alpha
Helix 37
AE1
B
413 416Right-handed 310
Helix 38
AE2
B
417 430Right-handed alpha
Helix 39
AE3
B
467 472Right-handed alpha
Helix 40
AE4
B
487 497Right-handed alpha
Helix 41
AE5
B
510 519Right-handed alpha
Helix 42
AE6
B
527 531Right-handed 310
Helix 43
AE7
B
544 569Right-handed alpha
Helix 44
AE8
B
592 597Right-handed alpha
Helix 45
AE9
B
597 614Right-handed alpha
Helix 46
AF1
B
627 633Right-handed alpha
Helix 47
AF2
B
636 665Right-handed alpha
Helix 48
AF3
B
674 700Right-handed alpha
Helix 49
AF4
B
702 712Right-handed alpha
Helix 50
AF5
B
713 721Right-handed alpha
Helix 51
AF6
B
726 730Right-handed 310
Helix 52
AF7
B
733 738Right-handed alpha
Helix 53
AF8
B
743 755Right-handed alpha
Helix 54
AF9
B
762 790Right-handed alpha
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There are 10 sheets in PDB entry 8Z0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
123 126anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
251 255parallel
Strand 3
A
219 223parallel
Strand 4
A
144 146parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
276 278anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
483 484parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
537 538anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 535first strand
Strand 2
B
579 580parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
B
534 538parallel
Strand 3
B
502 505anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
123 126anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
269 271parallel
Strand 3
B
276 279anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 441first strand
Strand 2
B
480 484parallel
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