Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z0Q entry

There are 2 chains in PDB entry 8Z0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 101	GLY 548
D	VAL 101	GLY 551

There are 30 helices in PDB entry 8Z0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	114	119	Right-handed 310
Helix 2	AA2	C	146	161	Right-handed alpha
Helix 3	AA3	C	162	164	Right-handed 310
Helix 4	AA4	C	194	206	Right-handed alpha
Helix 5	AA5	C	242	262	Right-handed alpha
Helix 6	AA6	C	274	286	Right-handed alpha
Helix 7	AA7	C	288	302	Right-handed alpha
Helix 8	AA8	C	334	347	Right-handed alpha
Helix 9	AA9	C	350	364	Right-handed alpha
Helix 10	AB1	C	365	367	Right-handed 310
Helix 11	AB2	C	383	387	Right-handed 310
Helix 12	AB3	C	408	426	Right-handed alpha
Helix 13	AB4	C	430	439	Right-handed alpha
Helix 14	AB5	C	512	533	Right-handed alpha
Helix 15	AB6	C	537	547	Right-handed alpha
Helix 16	AB7	D	113	119	Right-handed 310
Helix 17	AB8	D	146	161	Right-handed alpha
Helix 18	AB9	D	162	164	Right-handed 310
Helix 19	AC1	D	194	206	Right-handed alpha
Helix 20	AC2	D	242	262	Right-handed alpha
Helix 21	AC3	D	274	285	Right-handed alpha
Helix 22	AC4	D	289	302	Right-handed alpha
Helix 23	AC5	D	333	348	Right-handed alpha
Helix 24	AC6	D	350	364	Right-handed alpha
Helix 25	AC7	D	365	367	Right-handed 310
Helix 26	AC8	D	384	389	Right-handed 310
Helix 27	AC9	D	408	425	Right-handed alpha
Helix 28	AD1	D	430	439	Right-handed alpha
Helix 29	AD2	D	512	533	Right-handed alpha
Helix 30	AD3	D	537	546	Right-handed alpha

There are 6 sheets in PDB entry 8Z0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	219	224	parallel
Strand 3	C	229	236	anti-parallel
Strand 4	C	135	142	anti-parallel
Strand 5	C	474	478	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	171	first strand
Strand 2	C	174	179	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	333	first strand
Strand 2	C	499	507	anti-parallel
Strand 3	C	489	496	anti-parallel
Strand 4	C	452	457	parallel
Strand 5	C	371	379	parallel
Strand 6	C	394	402	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	175	179	anti-parallel
Strand 3	D	166	170	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	219	226	parallel
Strand 3	D	229	236	anti-parallel
Strand 4	D	135	142	anti-parallel
Strand 5	D	474	477	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	332	first strand
Strand 2	D	499	507	anti-parallel
Strand 3	D	489	496	anti-parallel
Strand 4	D	452	457	parallel
Strand 5	D	371	379	parallel
Strand 6	D	394	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z0Q