Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z0R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z0R entry

There are 4 chains in PDB entry 8Z0R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 101	GLY 549
B	VAL 101	GLY 551
C	VAL 101	GLY 548
D	VAL 101	GLY 551

There are 58 helices in PDB entry 8Z0R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	113	117	Right-handed 310
Helix 2	AA2	A	146	161	Right-handed alpha
Helix 3	AA3	A	162	164	Right-handed 310
Helix 4	AA4	A	194	206	Right-handed alpha
Helix 5	AA5	A	244	261	Right-handed alpha
Helix 6	AA6	A	274	285	Right-handed alpha
Helix 7	AA7	A	289	302	Right-handed alpha
Helix 8	AA8	A	333	347	Right-handed alpha
Helix 9	AA9	A	350	364	Right-handed alpha
Helix 10	AB1	A	383	387	Right-handed 310
Helix 11	AB2	A	409	426	Right-handed alpha
Helix 12	AB3	A	430	438	Right-handed alpha
Helix 13	AB4	A	512	521	Right-handed alpha
Helix 14	AB5	A	525	533	Right-handed alpha
Helix 15	AB6	A	537	546	Right-handed alpha
Helix 16	AB7	B	114	119	Right-handed 310
Helix 17	AB8	B	146	161	Right-handed alpha
Helix 18	AB9	B	162	164	Right-handed 310
Helix 19	AC1	B	194	206	Right-handed alpha
Helix 20	AC2	B	242	262	Right-handed alpha
Helix 21	AC3	B	274	285	Right-handed alpha
Helix 22	AC4	B	287	302	Right-handed alpha
Helix 23	AC5	B	333	347	Right-handed alpha
Helix 24	AC6	B	350	364	Right-handed alpha
Helix 25	AC7	B	383	387	Right-handed 310
Helix 26	AC8	B	408	426	Right-handed alpha
Helix 27	AC9	B	430	439	Right-handed alpha
Helix 28	AD1	B	512	533	Right-handed alpha
Helix 29	AD2	B	537	546	Right-handed alpha
Helix 30	AD3	C	114	119	Right-handed 310
Helix 31	AD4	C	146	161	Right-handed alpha
Helix 32	AD5	C	162	164	Right-handed 310
Helix 33	AD6	C	194	206	Right-handed alpha
Helix 34	AD7	C	242	262	Right-handed alpha
Helix 35	AD8	C	274	286	Right-handed alpha
Helix 36	AD9	C	288	302	Right-handed alpha
Helix 37	AE1	C	333	346	Right-handed alpha
Helix 38	AE2	C	350	364	Right-handed alpha
Helix 39	AE3	C	365	367	Right-handed 310
Helix 40	AE4	C	383	388	Right-handed 310
Helix 41	AE5	C	408	426	Right-handed alpha
Helix 42	AE6	C	430	439	Right-handed alpha
Helix 43	AE7	C	512	533	Right-handed alpha
Helix 44	AE8	C	537	546	Right-handed alpha
Helix 45	AE9	D	113	119	Right-handed 310
Helix 46	AF1	D	146	161	Right-handed alpha
Helix 47	AF2	D	162	164	Right-handed 310
Helix 48	AF3	D	194	206	Right-handed alpha
Helix 49	AF4	D	242	262	Right-handed alpha
Helix 50	AF5	D	274	285	Right-handed alpha
Helix 51	AF6	D	288	302	Right-handed alpha
Helix 52	AF7	D	333	348	Right-handed alpha
Helix 53	AF8	D	350	364	Right-handed alpha
Helix 54	AF9	D	383	389	Right-handed 310
Helix 55	AG1	D	408	426	Right-handed alpha
Helix 56	AG2	D	430	439	Right-handed alpha
Helix 57	AG3	D	512	533	Right-handed alpha
Helix 58	AG4	D	537	546	Right-handed alpha

There are 12 sheets in PDB entry 8Z0R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	219	224	parallel
Strand 3	A	230	236	anti-parallel
Strand 4	A	135	142	anti-parallel
Strand 5	A	474	477	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	171	first strand
Strand 2	A	174	179	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	332	first strand
Strand 2	A	499	507	anti-parallel
Strand 3	A	489	496	anti-parallel
Strand 4	A	452	457	parallel
Strand 5	A	371	379	parallel
Strand 6	A	394	402	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	174	179	anti-parallel
Strand 3	B	166	171	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	219	226	parallel
Strand 3	B	229	236	anti-parallel
Strand 4	B	135	142	anti-parallel
Strand 5	B	474	477	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	332	first strand
Strand 2	B	499	507	anti-parallel
Strand 3	B	489	496	anti-parallel
Strand 4	B	452	457	parallel
Strand 5	B	371	379	parallel
Strand 6	B	394	402	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	174	179	anti-parallel
Strand 3	C	166	171	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	219	226	parallel
Strand 3	C	229	236	anti-parallel
Strand 4	C	135	142	anti-parallel
Strand 5	C	474	478	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	332	first strand
Strand 2	C	499	507	anti-parallel
Strand 3	C	489	496	anti-parallel
Strand 4	C	452	457	parallel
Strand 5	C	371	379	parallel
Strand 6	C	394	402	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	174	179	anti-parallel
Strand 3	D	166	171	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	219	226	parallel
Strand 3	D	229	236	anti-parallel
Strand 4	D	135	142	anti-parallel
Strand 5	D	474	477	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	332	first strand
Strand 2	D	499	507	anti-parallel
Strand 3	D	489	496	anti-parallel
Strand 4	D	452	457	parallel
Strand 5	D	371	379	parallel
Strand 6	D	394	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z0R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z0R