Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z0S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z0S entry

There are 3 chains in PDB entry 8Z0S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 101	GLY 551
C	VAL 101	GLY 548
D	VAL 101	GLY 551

There are 41 helices in PDB entry 8Z0S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	113	117	Right-handed 310
Helix 2	AA2	B	146	161	Right-handed alpha
Helix 3	AA3	B	162	164	Right-handed 310
Helix 4	AA4	B	193	206	Right-handed alpha
Helix 5	AA5	B	242	261	Right-handed alpha
Helix 6	AA6	B	274	285	Right-handed alpha
Helix 7	AA7	B	287	302	Right-handed alpha
Helix 8	AA8	B	333	347	Right-handed alpha
Helix 9	AA9	B	350	364	Right-handed alpha
Helix 10	AB1	B	408	424	Right-handed alpha
Helix 11	AB2	B	430	439	Right-handed alpha
Helix 12	AB3	B	512	533	Right-handed alpha
Helix 13	AB4	B	537	547	Right-handed alpha
Helix 14	AB5	C	114	119	Right-handed 310
Helix 15	AB6	C	146	161	Right-handed alpha
Helix 16	AB7	C	162	164	Right-handed 310
Helix 17	AB8	C	195	206	Right-handed alpha
Helix 18	AB9	C	242	262	Right-handed alpha
Helix 19	AC1	C	274	286	Right-handed alpha
Helix 20	AC2	C	288	302	Right-handed alpha
Helix 21	AC3	C	334	346	Right-handed alpha
Helix 22	AC4	C	350	364	Right-handed alpha
Helix 23	AC5	C	383	387	Right-handed 310
Helix 24	AC6	C	408	424	Right-handed alpha
Helix 25	AC7	C	430	439	Right-handed alpha
Helix 26	AC8	C	512	533	Right-handed alpha
Helix 27	AC9	C	537	546	Right-handed alpha
Helix 28	AD1	D	114	118	Right-handed 310
Helix 29	AD2	D	146	161	Right-handed alpha
Helix 30	AD3	D	162	164	Right-handed 310
Helix 31	AD4	D	194	206	Right-handed alpha
Helix 32	AD5	D	242	262	Right-handed alpha
Helix 33	AD6	D	274	285	Right-handed alpha
Helix 34	AD7	D	288	302	Right-handed alpha
Helix 35	AD8	D	333	348	Right-handed alpha
Helix 36	AD9	D	350	364	Right-handed alpha
Helix 37	AE1	D	384	389	Right-handed 310
Helix 38	AE2	D	408	424	Right-handed alpha
Helix 39	AE3	D	430	439	Right-handed alpha
Helix 40	AE4	D	512	533	Right-handed alpha
Helix 41	AE5	D	537	546	Right-handed alpha

There are 9 sheets in PDB entry 8Z0S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	174	179	anti-parallel
Strand 3	B	166	171	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	219	226	parallel
Strand 3	B	229	236	anti-parallel
Strand 4	B	135	142	anti-parallel
Strand 5	B	474	477	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	332	first strand
Strand 2	B	499	507	anti-parallel
Strand 3	B	489	496	anti-parallel
Strand 4	B	452	457	parallel
Strand 5	B	371	379	parallel
Strand 6	B	394	402	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	174	179	anti-parallel
Strand 3	C	166	171	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	219	226	parallel
Strand 3	C	229	236	anti-parallel
Strand 4	C	135	142	anti-parallel
Strand 5	C	474	477	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	333	first strand
Strand 2	C	499	507	anti-parallel
Strand 3	C	489	496	anti-parallel
Strand 4	C	452	457	parallel
Strand 5	C	371	379	parallel
Strand 6	C	394	402	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	174	179	anti-parallel
Strand 3	D	166	171	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	219	226	parallel
Strand 3	D	229	236	anti-parallel
Strand 4	D	135	142	anti-parallel
Strand 5	D	474	477	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	332	first strand
Strand 2	D	499	507	anti-parallel
Strand 3	D	489	496	anti-parallel
Strand 4	D	452	457	parallel
Strand 5	D	371	379	parallel
Strand 6	D	394	402	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z0S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z0S