Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z12 entry

There is 1 chain in PDB entry 8Z12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8Z12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
36 41Right-handed 310
Helix 3
AA3
A
59 64Right-handed alpha
Helix 4
AA4
A
79 94Right-handed alpha
Helix 5
AA5
A
96 98Right-handed 310
Helix 6
AA6
A
155 159Right-handed 310
Helix 7
AA7
A
167 169Right-handed 310
Helix 8
AA8
A
172 176Right-handed 310
Helix 9
AA9
A
186 197Right-handed alpha
Helix 10
AB1
A
223 227Right-handed alpha
Helix 11
AB2
A
229 235Right-handed alpha
Helix 12
AB3
A
236 253Right-handed alpha
Helix 13
AB4
A
254 259Right-handed 310
Helix 14
AB5
A
277 284Right-handed alpha
Helix 15
AB6
A
341 345Right-handed 310
Helix 16
AB7
A
365 381Right-handed alpha
Helix 17
AB8
A
388 408Right-handed alpha
Helix 18
AB9
A
412 416Right-handed 310
Helix 19
AC1
A
418 425Right-handed alpha
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There are 7 sheets in PDB entry 8Z12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
26 29parallel
Strand 3
A
3 6parallel
Strand 4
A
135 138parallel
Strand 5
A
353 355parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 111first strand
Strand 2
A
117 122anti-parallel
Strand 3
A
128 133anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
320 321anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
313 316parallel
Strand 3
A
179 183parallel
Strand 4
A
202 206parallel
Strand 5
A
288 290parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
273 274parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
221 222anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 297first strand
Strand 2
A
300 303anti-parallel
Strand 3
A
308 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il