Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z1C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z1C entry

There are 6 chains in PDB entry 8Z1C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	MET 1	TRP 460
F	MET 1	TRP 460
D	MET 1	TRP 460
A	MET 1	TRP 460
B	MET 1	TRP 460
C	MET 1	TRP 460

There are112 helices in PDB entry 8Z1C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	7	23	Right-handed alpha
Helix 2	AA2	E	24	30	Right-handed alpha
Helix 3	AA3	E	31	40	Right-handed alpha
Helix 4	AA4	E	88	103	Right-handed alpha
Helix 5	AA5	E	125	141	Right-handed alpha
Helix 6	AA6	E	142	144	Right-handed 310
Helix 7	AA7	E	158	174	Right-handed alpha
Helix 8	AA8	E	197	213	Right-handed alpha
Helix 9	AA9	E	230	244	Right-handed alpha
Helix 10	AB1	E	268	281	Right-handed alpha
Helix 11	AB2	E	284	290	Right-handed alpha
Helix 12	AB3	E	291	297	Right-handed alpha
Helix 13	AB4	E	305	309	Right-handed 310
Helix 14	AB5	E	326	337	Right-handed alpha
Helix 15	AB6	E	350	364	Right-handed alpha
Helix 16	AB7	E	374	379	Right-handed alpha
Helix 17	AB8	E	381	396	Right-handed alpha
Helix 18	AB9	E	400	422	Right-handed alpha
Helix 19	AC1	E	436	456	Right-handed alpha
Helix 20	AC2	F	7	23	Right-handed alpha
Helix 21	AC3	F	24	30	Right-handed alpha
Helix 22	AC4	F	31	41	Right-handed alpha
Helix 23	AC5	F	88	106	Right-handed alpha
Helix 24	AC6	F	125	142	Right-handed alpha
Helix 25	AC7	F	158	174	Right-handed alpha
Helix 26	AC8	F	192	194	Right-handed 310
Helix 27	AC9	F	195	213	Right-handed alpha
Helix 28	AD1	F	231	239	Right-handed alpha
Helix 29	AD2	F	240	244	Right-handed 310
Helix 30	AD3	F	268	281	Right-handed alpha
Helix 31	AD4	F	286	291	Right-handed alpha
Helix 32	AD5	F	291	296	Right-handed alpha
Helix 33	AD6	F	326	337	Right-handed alpha
Helix 34	AD7	F	350	363	Right-handed alpha
Helix 35	AD8	F	380	395	Right-handed alpha
Helix 36	AD9	F	400	408	Right-handed alpha
Helix 37	AE1	F	412	423	Right-handed alpha
Helix 38	AE2	F	436	457	Right-handed alpha
Helix 39	AE3	D	7	23	Right-handed alpha
Helix 40	AE4	D	25	30	Right-handed alpha
Helix 41	AE5	D	32	41	Right-handed alpha
Helix 42	AE6	D	88	106	Right-handed alpha
Helix 43	AE7	D	125	141	Right-handed alpha
Helix 44	AE8	D	142	144	Right-handed 310
Helix 45	AE9	D	158	174	Right-handed alpha
Helix 46	AF1	D	197	213	Right-handed alpha
Helix 47	AF2	D	231	244	Right-handed alpha
Helix 48	AF3	D	268	281	Right-handed alpha
Helix 49	AF4	D	284	291	Right-handed alpha
Helix 50	AF5	D	291	296	Right-handed alpha
Helix 51	AF6	D	305	309	Right-handed 310
Helix 52	AF7	D	326	337	Right-handed alpha
Helix 53	AF8	D	350	363	Right-handed alpha
Helix 54	AF9	D	374	379	Right-handed alpha
Helix 55	AG1	D	381	395	Right-handed alpha
Helix 56	AG2	D	400	422	Right-handed alpha
Helix 57	AG3	D	437	457	Right-handed alpha
Helix 58	AG4	A	7	23	Right-handed alpha
Helix 59	AG5	A	25	30	Right-handed alpha
Helix 60	AG6	A	32	42	Right-handed alpha
Helix 61	AG7	A	88	106	Right-handed alpha
Helix 62	AG8	A	125	141	Right-handed alpha
Helix 63	AG9	A	142	144	Right-handed 310
Helix 64	AH1	A	158	174	Right-handed alpha
Helix 65	AH2	A	192	194	Right-handed 310
Helix 66	AH3	A	195	213	Right-handed alpha
Helix 67	AH4	A	229	241	Right-handed alpha
Helix 68	AH5	A	268	281	Right-handed alpha
Helix 69	AH6	A	286	291	Right-handed alpha
Helix 70	AH7	A	291	298	Right-handed alpha
Helix 71	AH8	A	305	310	Right-handed 310
Helix 72	AH9	A	326	337	Right-handed alpha
Helix 73	AI1	A	350	363	Right-handed alpha
Helix 74	AI2	A	381	395	Right-handed alpha
Helix 75	AI3	A	400	408	Right-handed alpha
Helix 76	AI4	A	412	423	Right-handed alpha
Helix 77	AI5	A	437	456	Right-handed alpha
Helix 78	AI6	B	7	23	Right-handed alpha
Helix 79	AI7	B	24	30	Right-handed alpha
Helix 80	AI8	B	32	41	Right-handed alpha
Helix 81	AI9	B	88	106	Right-handed alpha
Helix 82	AJ1	B	125	142	Right-handed alpha
Helix 83	AJ2	B	158	174	Right-handed alpha
Helix 84	AJ3	B	192	194	Right-handed 310
Helix 85	AJ4	B	195	213	Right-handed alpha
Helix 86	AJ5	B	231	242	Right-handed alpha
Helix 87	AJ6	B	268	281	Right-handed alpha
Helix 88	AJ7	B	291	296	Right-handed alpha
Helix 89	AJ8	B	326	337	Right-handed alpha
Helix 90	AJ9	B	350	363	Right-handed alpha
Helix 91	AK1	B	381	395	Right-handed alpha
Helix 92	AK2	B	400	408	Right-handed alpha
Helix 93	AK3	B	412	423	Right-handed alpha
Helix 94	AK4	B	436	457	Right-handed alpha
Helix 95	AK5	C	7	23	Right-handed alpha
Helix 96	AK6	C	24	30	Right-handed alpha
Helix 97	AK7	C	32	41	Right-handed alpha
Helix 98	AK8	C	88	106	Right-handed alpha
Helix 99	AK9	C	125	142	Right-handed alpha
Helix 100	AL1	C	158	174	Right-handed alpha
Helix 101	AL2	C	192	194	Right-handed 310
Helix 102	AL3	C	195	214	Right-handed alpha
Helix 103	AL4	C	230	239	Right-handed alpha
Helix 104	AL5	C	240	244	Right-handed 310
Helix 105	AL6	C	268	281	Right-handed alpha
Helix 106	AL7	C	291	298	Right-handed alpha
Helix 107	AL8	C	326	337	Right-handed alpha
Helix 108	AL9	C	350	363	Right-handed alpha
Helix 109	AM1	C	380	395	Right-handed alpha
Helix 110	AM2	C	400	408	Right-handed alpha
Helix 111	AM3	C	412	423	Right-handed alpha
Helix 112	AM4	C	436	457	Right-handed alpha

There are 17 sheets in PDB entry 8Z1C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	114	117	parallel
Strand 3	E	60	69	anti-parallel
Strand 4	E	45	54	anti-parallel
Strand 5	B	45	54	anti-parallel
Strand 6	B	60	69	anti-parallel
Strand 7	B	114	117	anti-parallel
Strand 8	B	77	83	parallel
Strand 9	B	149	152	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	79	first strand
Strand 2	E	149	151	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	247	first strand
Strand 2	E	223	227	parallel
Strand 3	E	315	318	parallel
Strand 4	E	340	342	parallel
Strand 5	E	371	373	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	251	first strand
Strand 2	E	256	259	anti-parallel
Strand 3	E	298	300	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	153	first strand
Strand 2	F	77	83	parallel
Strand 3	F	114	117	parallel
Strand 4	F	60	69	anti-parallel
Strand 5	F	45	54	anti-parallel
Strand 6	C	45	54	anti-parallel
Strand 7	C	60	69	anti-parallel
Strand 8	C	114	117	anti-parallel
Strand 9	C	77	83	parallel
Strand 10	C	149	152	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	224	first strand
Strand 2	F	246	247	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	259	first strand
Strand 2	F	298	299	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	77	83	parallel
Strand 3	D	114	117	parallel
Strand 4	D	60	68	anti-parallel
Strand 5	D	45	54	anti-parallel
Strand 6	A	45	54	anti-parallel
Strand 7	A	60	69	anti-parallel
Strand 8	A	114	117	anti-parallel
Strand 9	A	77	83	parallel
Strand 10	A	149	152	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	246	247	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	259	first strand
Strand 2	D	298	300	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	316	first strand
Strand 2	D	340	342	parallel
Strand 3	D	371	373	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	246	247	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	258	first strand
Strand 2	A	299	300	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	223	226	parallel
Strand 3	B	315	317	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	259	first strand
Strand 2	B	298	302	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	315	317	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	258	first strand
Strand 2	C	299	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z1C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z1C