Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z1E entry

There are 3 chains in PDB entry 8Z1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34CYS 318
B
 SER 34CYS 318
R
 SER 34CYS 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8Z1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 65Right-handed alpha
Helix 2
AA2
A
71 96Right-handed alpha
Helix 3
AA3
A
105 140Right-handed alpha
Helix 4
AA4
A
144 148Right-handed 310
Helix 5
AA5
A
149 171Right-handed alpha
Helix 6
AA6
A
171 176Right-handed alpha
Helix 7
AA7
A
190 192Right-handed 310
Helix 8
AA8
A
193 206Right-handed alpha
Helix 9
AA9
A
207 221Right-handed alpha
Helix 10
AB1
A
229 261Right-handed alpha
Helix 11
AB2
A
271 286Right-handed alpha
Helix 12
AB3
A
286 291Right-handed alpha
Helix 13
AB4
A
292 298Right-handed alpha
Helix 14
AB5
A
302 317Right-handed alpha
Helix 15
AB6
B
35 65Right-handed alpha
Helix 16
AB7
B
71 96Right-handed alpha
Helix 17
AB8
B
105 141Right-handed alpha
Helix 18
AB9
B
144 148Right-handed 310
Helix 19
AC1
B
149 176Right-handed alpha
Helix 20
AC2
B
190 192Right-handed 310
Helix 21
AC3
B
193 206Right-handed alpha
Helix 22
AC4
B
207 222Right-handed alpha
Helix 23
AC5
B
229 261Right-handed alpha
Helix 24
AC6
B
271 286Right-handed alpha
Helix 25
AC7
B
286 291Right-handed alpha
Helix 26
AC8
B
292 298Right-handed alpha
Helix 27
AC9
B
302 317Right-handed alpha
Helix 28
AD1
R
35 65Right-handed alpha
Helix 29
AD2
R
71 96Right-handed alpha
Helix 30
AD3
R
105 140Right-handed alpha
Helix 31
AD4
R
144 148Right-handed 310
Helix 32
AD5
R
149 176Right-handed alpha
Helix 33
AD6
R
190 192Right-handed 310
Helix 34
AD7
R
193 206Right-handed alpha
Helix 35
AD8
R
207 222Right-handed alpha
Helix 36
AD9
R
229 261Right-handed alpha
Helix 37
AE1
R
271 286Right-handed alpha
Helix 38
AE2
R
286 291Right-handed alpha
Helix 39
AE3
R
292 298Right-handed alpha
Helix 40
AE4
R
302 317Right-handed alpha
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There are 3 sheets in PDB entry 8Z1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
187 188anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
187 188anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
179 180first strand
Strand 2
R
187 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il