Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z1F entry

There are 2 chains in PDB entry 8Z1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
 G 1 A 66
A
 SER 52GLU 780
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8Z1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 98Right-handed alpha
Helix 2
AA2
A
114 119Right-handed alpha
Helix 3
AA3
A
120 132Right-handed alpha
Helix 4
AA4
A
141 143Right-handed 310
Helix 5
AA5
A
144 156Right-handed alpha
Helix 6
AA6
A
255 263Right-handed alpha
Helix 7
AA7
A
270 281Right-handed alpha
Helix 8
AA8
A
292 297Right-handed alpha
Helix 9
AA9
A
316 321Right-handed alpha
Helix 10
AB1
A
323 328Right-handed alpha
Helix 11
AB2
A
345 351Right-handed alpha
Helix 12
AB3
A
356 361Right-handed alpha
Helix 13
AB4
A
379 393Right-handed alpha
Helix 14
AB5
A
442 451Right-handed alpha
Helix 15
AB6
A
455 468Right-handed alpha
Helix 16
AB7
A
519 525Right-handed alpha
Helix 17
AB8
A
528 530Right-handed 310
Helix 18
AB9
A
531 539Right-handed alpha
Helix 19
AC1
A
548 552Right-handed 310
Helix 20
AC2
A
554 569Right-handed alpha
Helix 21
AC3
A
583 595Right-handed alpha
Helix 22
AC4
A
598 602Right-handed 310
Helix 23
AC5
A
607 611Right-handed 310
Helix 24
AC6
A
620 632Right-handed alpha
Helix 25
AC7
A
670 678Right-handed alpha
Helix 26
AC8
A
696 701Right-handed alpha
Helix 27
AC9
A
704 716Right-handed alpha
Helix 28
AD1
A
759 762Right-handed 310
Helix 29
AD2
A
763 772Right-handed alpha
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There are 6 sheets in PDB entry 8Z1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
135 138parallel
Strand 3
A
107 109parallel
Strand 4
A
82 85parallel
Strand 5
A
74 78anti-parallel
Strand 6
A
58 62anti-parallel
Strand 7
A
425 426anti-parallel
Strand 8
A
432 433anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
179 183anti-parallel
Strand 3
A
242 246anti-parallel
Strand 4
A
305 309anti-parallel
Strand 5
A
337 342parallel
Strand 6
A
368 369parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
289 290anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
503 505anti-parallel
Strand 3
A
512 513anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
577 579parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 638first strand
Strand 2
A
651 655anti-parallel
Strand 3
A
660 665anti-parallel
Strand 4
A
682 687parallel
Strand 5
A
720 725parallel
Strand 6
A
743 745parallel
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