Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z1M entry

There are 6 chains in PDB entry 8Z1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	TRP 460
B	ASN 3	TRP 460
C	ASN 3	TRP 460
D	ASN 3	TRP 460
F	ASN 3	TRP 460
E	ASN 3	TRP 460

There are106 helices in PDB entry 8Z1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	24	Right-handed alpha
Helix 2	AA2	A	25	30	Right-handed alpha
Helix 3	AA3	A	32	42	Right-handed alpha
Helix 4	AA4	A	88	107	Right-handed alpha
Helix 5	AA5	A	125	141	Right-handed alpha
Helix 6	AA6	A	158	173	Right-handed alpha
Helix 7	AA7	A	195	214	Right-handed alpha
Helix 8	AA8	A	230	244	Right-handed alpha
Helix 9	AA9	A	268	281	Right-handed alpha
Helix 10	AB1	A	284	288	Right-handed 310
Helix 11	AB2	A	291	296	Right-handed alpha
Helix 12	AB3	A	305	310	Right-handed 310
Helix 13	AB4	A	326	337	Right-handed alpha
Helix 14	AB5	A	350	364	Right-handed alpha
Helix 15	AB6	A	374	379	Right-handed alpha
Helix 16	AB7	A	379	396	Right-handed alpha
Helix 17	AB8	A	400	426	Right-handed alpha
Helix 18	AB9	A	436	456	Right-handed alpha
Helix 19	AC1	B	7	24	Right-handed alpha
Helix 20	AC2	B	25	30	Right-handed alpha
Helix 21	AC3	B	32	41	Right-handed alpha
Helix 22	AC4	B	88	107	Right-handed alpha
Helix 23	AC5	B	125	141	Right-handed alpha
Helix 24	AC6	B	142	144	Right-handed 310
Helix 25	AC7	B	158	174	Right-handed alpha
Helix 26	AC8	B	196	213	Right-handed alpha
Helix 27	AC9	B	230	244	Right-handed alpha
Helix 28	AD1	B	268	278	Right-handed alpha
Helix 29	AD2	B	284	291	Right-handed alpha
Helix 30	AD3	B	292	295	Right-handed 310
Helix 31	AD4	B	326	337	Right-handed alpha
Helix 32	AD5	B	350	364	Right-handed alpha
Helix 33	AD6	B	380	396	Right-handed alpha
Helix 34	AD7	B	400	426	Right-handed alpha
Helix 35	AD8	B	436	456	Right-handed alpha
Helix 36	AD9	C	7	24	Right-handed alpha
Helix 37	AE1	C	25	30	Right-handed alpha
Helix 38	AE2	C	32	42	Right-handed alpha
Helix 39	AE3	C	88	107	Right-handed alpha
Helix 40	AE4	C	125	141	Right-handed alpha
Helix 41	AE5	C	158	174	Right-handed alpha
Helix 42	AE6	C	195	214	Right-handed alpha
Helix 43	AE7	C	230	244	Right-handed alpha
Helix 44	AE8	C	268	281	Right-handed alpha
Helix 45	AE9	C	285	290	Right-handed alpha
Helix 46	AF1	C	291	296	Right-handed alpha
Helix 47	AF2	C	305	309	Right-handed 310
Helix 48	AF3	C	326	337	Right-handed alpha
Helix 49	AF4	C	350	356	Right-handed alpha
Helix 50	AF5	C	357	364	Right-handed alpha
Helix 51	AF6	C	374	379	Right-handed alpha
Helix 52	AF7	C	379	396	Right-handed alpha
Helix 53	AF8	C	400	426	Right-handed alpha
Helix 54	AF9	C	436	456	Right-handed alpha
Helix 55	AG1	D	7	24	Right-handed alpha
Helix 56	AG2	D	32	42	Right-handed alpha
Helix 57	AG3	D	88	107	Right-handed alpha
Helix 58	AG4	D	125	141	Right-handed alpha
Helix 59	AG5	D	158	174	Right-handed alpha
Helix 60	AG6	D	196	213	Right-handed alpha
Helix 61	AG7	D	230	243	Right-handed alpha
Helix 62	AG8	D	268	281	Right-handed alpha
Helix 63	AG9	D	283	291	Right-handed alpha
Helix 64	AH1	D	291	297	Right-handed alpha
Helix 65	AH2	D	305	309	Right-handed 310
Helix 66	AH3	D	326	336	Right-handed alpha
Helix 67	AH4	D	350	362	Right-handed alpha
Helix 68	AH5	D	374	379	Right-handed alpha
Helix 69	AH6	D	380	396	Right-handed alpha
Helix 70	AH7	D	400	426	Right-handed alpha
Helix 71	AH8	D	436	456	Right-handed alpha
Helix 72	AH9	F	7	23	Right-handed alpha
Helix 73	AI1	F	32	42	Right-handed alpha
Helix 74	AI2	F	88	107	Right-handed alpha
Helix 75	AI3	F	125	141	Right-handed alpha
Helix 76	AI4	F	158	174	Right-handed alpha
Helix 77	AI5	F	195	214	Right-handed alpha
Helix 78	AI6	F	230	244	Right-handed alpha
Helix 79	AI7	F	268	281	Right-handed alpha
Helix 80	AI8	F	285	290	Right-handed alpha
Helix 81	AI9	F	291	297	Right-handed alpha
Helix 82	AJ1	F	305	309	Right-handed 310
Helix 83	AJ2	F	326	337	Right-handed alpha
Helix 84	AJ3	F	350	364	Right-handed alpha
Helix 85	AJ4	F	374	379	Right-handed alpha
Helix 86	AJ5	F	380	396	Right-handed alpha
Helix 87	AJ6	F	400	426	Right-handed alpha
Helix 88	AJ7	F	436	456	Right-handed alpha
Helix 89	AJ8	E	7	24	Right-handed alpha
Helix 90	AJ9	E	25	30	Right-handed alpha
Helix 91	AK1	E	32	41	Right-handed alpha
Helix 92	AK2	E	88	107	Right-handed alpha
Helix 93	AK3	E	125	141	Right-handed alpha
Helix 94	AK4	E	158	174	Right-handed alpha
Helix 95	AK5	E	196	213	Right-handed alpha
Helix 96	AK6	E	230	243	Right-handed alpha
Helix 97	AK7	E	268	281	Right-handed alpha
Helix 98	AK8	E	285	290	Right-handed alpha
Helix 99	AK9	E	291	297	Right-handed alpha
Helix 100	AL1	E	306	310	Right-handed 310
Helix 101	AL2	E	328	337	Right-handed alpha
Helix 102	AL3	E	350	364	Right-handed alpha
Helix 103	AL4	E	365	369	Right-handed 310
Helix 104	AL5	E	379	396	Right-handed alpha
Helix 105	AL6	E	400	427	Right-handed alpha
Helix 106	AL7	E	436	456	Right-handed alpha

There are 14 sheets in PDB entry 8Z1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	77	83	parallel
Strand 3	A	112	117	parallel
Strand 4	A	58	71	anti-parallel
Strand 5	A	45	55	anti-parallel
Strand 6	D	45	54	anti-parallel
Strand 7	D	60	71	anti-parallel
Strand 8	D	112	117	anti-parallel
Strand 9	D	80	83	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	247	first strand
Strand 2	A	222	226	parallel
Strand 3	A	315	317	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	371	373	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	77	83	parallel
Strand 3	B	112	117	parallel
Strand 4	B	60	71	anti-parallel
Strand 5	B	45	54	anti-parallel
Strand 6	F	45	54	anti-parallel
Strand 7	F	60	71	anti-parallel
Strand 8	F	112	117	anti-parallel
Strand 9	F	81	83	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	259	first strand
Strand 2	B	298	300	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	316	first strand
Strand 2	B	340	342	parallel
Strand 3	B	371	373	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	112	117	parallel
Strand 3	C	60	71	anti-parallel
Strand 4	C	45	54	anti-parallel
Strand 5	E	45	55	anti-parallel
Strand 6	E	58	71	anti-parallel
Strand 7	E	112	117	anti-parallel
Strand 8	E	77	83	parallel
Strand 9	E	149	152	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	223	225	parallel
Strand 3	C	315	316	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	259	first strand
Strand 2	C	298	301	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	D	223	225	parallel
Strand 3	D	315	316	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	259	first strand
Strand 2	D	298	301	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	224	first strand
Strand 2	F	246	247	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	250	first strand
Strand 2	F	256	259	anti-parallel
Strand 3	F	298	301	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	251	first strand
Strand 2	E	256	259	anti-parallel
Strand 3	E	298	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z1M