Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z1P entry

There are 2 chains in PDB entry 8Z1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9LEU 1072
B
 G 1 A 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8Z1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 25Right-handed alpha
Helix 2
AA2
A
25 33Right-handed alpha
Helix 3
AA3
A
54 74Right-handed alpha
Helix 4
AA4
A
88 100Right-handed alpha
Helix 5
AA5
A
103 111Right-handed alpha
Helix 6
AA6
A
111 125Right-handed alpha
Helix 7
AA7
A
126 138Right-handed alpha
Helix 8
AA8
A
151 168Right-handed alpha
Helix 9
AA9
A
189 194Right-handed alpha
Helix 10
AB1
A
225 232Right-handed 310
Helix 11
AB2
A
258 265Right-handed 310
Helix 12
AB3
A
268 272Right-handed 310
Helix 13
AB4
A
282 286Right-handed alpha
Helix 14
AB5
A
297 302Right-handed alpha
Helix 15
AB6
A
330 340Right-handed alpha
Helix 16
AB7
A
363 367Right-handed 310
Helix 17
AB8
A
370 385Right-handed alpha
Helix 18
AB9
A
420 422Right-handed 310
Helix 19
AC1
A
423 434Right-handed alpha
Helix 20
AC2
A
439 444Right-handed alpha
Helix 21
AC3
A
446 452Right-handed alpha
Helix 22
AC4
A
484 493Right-handed alpha
Helix 23
AC5
A
501 506Right-handed alpha
Helix 24
AC6
A
527 534Right-handed alpha
Helix 25
AC7
A
534 539Right-handed alpha
Helix 26
AC8
A
546 554Right-handed alpha
Helix 27
AC9
A
562 567Right-handed 310
Helix 28
AD1
A
568 581Right-handed alpha
Helix 29
AD2
A
612 621Right-handed alpha
Helix 30
AD3
A
621 631Right-handed alpha
Helix 31
AD4
A
632 637Right-handed 310
Helix 32
AD5
A
643 654Right-handed alpha
Helix 33
AD6
A
654 677Right-handed alpha
Helix 34
AD7
A
690 713Right-handed alpha
Helix 35
AD8
A
715 733Right-handed alpha
Helix 36
AD9
A
733 738Right-handed alpha
Helix 37
AE1
A
738 744Right-handed alpha
Helix 38
AE2
A
747 769Right-handed alpha
Helix 39
AE3
A
775 785Right-handed alpha
Helix 40
AE4
A
786 788Right-handed 310
Helix 41
AE5
A
789 797Right-handed alpha
Helix 42
AE6
A
817 841Right-handed alpha
Helix 43
AE7
A
858 868Right-handed alpha
Helix 44
AE8
A
868 877Right-handed alpha
Helix 45
AE9
A
886 891Right-handed alpha
Helix 46
AF1
A
899 908Right-handed alpha
Helix 47
AF2
A
911 912Right-handed 310
Helix 48
AF3
A
914 916Right-handed 310
Helix 49
AF4
A
917 921Right-handed 310
Helix 50
AF5
A
922 933Right-handed alpha
Helix 51
AF6
A
954 961Right-handed alpha
Helix 52
AF7
A
979 1003Right-handed alpha
Helix 53
AF8
A
1022 1030Right-handed alpha
Helix 54
AF9
A
1030 1037Right-handed alpha
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There are 12 sheets in PDB entry 8Z1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
142 148parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
171 181anti-parallel
Strand 3
A
409 418anti-parallel
Strand 4
A
456 457anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 281first strand
Strand 2
A
242 248anti-parallel
Strand 3
A
253 257anti-parallel
Strand 4
A
217 223parallel
Strand 5
A
197 212anti-parallel
Strand 6
A
289 290anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 281first strand
Strand 2
A
242 248anti-parallel
Strand 3
A
253 257anti-parallel
Strand 4
A
217 223parallel
Strand 5
A
197 212anti-parallel
Strand 6
A
388 399anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
234 237parallel
Strand 3
A
323 325anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
588 590parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
525 526anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
470 472anti-parallel
Strand 3
A
518 521anti-parallel
Strand 4
A
510 511anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
639 641parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
878 884first strand
Strand 2
A
849 855parallel
Strand 3
A
971 975anti-parallel
Strand 4
A
962 966anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
947 950anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1044first strand
Strand 2
A
1012 1018parallel
Strand 3
A
1063 1069anti-parallel
Strand 4
A
1054 1060anti-parallel
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