Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z1W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z1W entry

There are 4 chains in PDB entry 8Z1W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ARG 336
B
 THR 17LEU 298
C
 LEU 3PRO 325
D
 GLN 9ARG 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8Z1W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 30Right-handed alpha
Helix 2
AA2
A
63 75Right-handed alpha
Helix 3
AA3
A
87 124Right-handed alpha
Helix 4
AA4
A
127 142Right-handed alpha
Helix 5
AA5
A
144 157Right-handed alpha
Helix 6
AA6
A
184 192Right-handed alpha
Helix 7
AA7
A
196 204Right-handed alpha
Helix 8
AA8
A
205 233Right-handed alpha
Helix 9
AA9
A
234 243Right-handed alpha
Helix 10
AB1
A
246 253Right-handed alpha
Helix 11
AB2
A
254 285Right-handed alpha
Helix 12
AB3
A
289 301Right-handed alpha
Helix 13
AB4
A
302 332Right-handed alpha
Helix 14
AB5
B
18 27Right-handed alpha
Helix 15
AB6
B
29 48Right-handed alpha
Helix 16
AB7
B
48 53Right-handed alpha
Helix 17
AB8
B
61 65Right-handed 310
Helix 18
AB9
B
89 127Right-handed alpha
Helix 19
AC1
B
127 142Right-handed alpha
Helix 20
AC2
B
145 158Right-handed alpha
Helix 21
AC3
B
160 189Right-handed alpha
Helix 22
AC4
B
190 199Right-handed alpha
Helix 23
AC5
B
202 209Right-handed alpha
Helix 24
AC6
B
211 240Right-handed alpha
Helix 25
AC7
B
250 255Right-handed alpha
Helix 26
AC8
B
258 262Right-handed 310
Helix 27
AC9
B
265 295Right-handed alpha
Helix 28
AD1
C
45 55Right-handed alpha
Helix 29
AD2
C
79 87Right-handed alpha
Helix 30
AD3
C
107 120Right-handed alpha
Helix 31
AD4
C
123 138Right-handed alpha
Helix 32
AD5
C
144 148Right-handed 310
Helix 33
AD6
C
150 154Right-handed 310
Helix 34
AD7
C
155 168Right-handed alpha
Helix 35
AD8
C
169 171Right-handed 310
Helix 36
AD9
C
185 203Right-handed alpha
Helix 37
AE1
C
213 221Right-handed alpha
Helix 38
AE2
C
239 244Right-handed alpha
Helix 39
AE3
C
247 256Right-handed alpha
Helix 40
AE4
C
257 261Right-handed 310
Helix 41
AE5
C
294 300Right-handed alpha
Helix 42
AE6
D
60 69Right-handed alpha
Helix 43
AE7
D
93 98Right-handed alpha
Helix 44
AE8
D
117 130Right-handed alpha
Helix 45
AE9
D
133 149Right-handed alpha
Helix 46
AF1
D
151 157Right-handed 310
Helix 47
AF2
D
158 162Right-handed 310
Helix 48
AF3
D
163 177Right-handed alpha
Helix 49
AF4
D
193 212Right-handed alpha
Helix 50
AF5
D
221 229Right-handed alpha
Helix 51
AF6
D
246 252Right-handed alpha
Helix 52
AF7
D
255 265Right-handed alpha
Helix 53
AF8
D
269 273Right-handed 310
Helix 54
AF9
D
303 308Right-handed 310
Helix 55
AG1
D
323 331Right-handed alpha
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There are 5 sheets in PDB entry 8Z1W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 30first strand
Strand 2
C
4 13anti-parallel
Strand 3
C
61 64anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 30first strand
Strand 2
C
4 13anti-parallel
Strand 3
C
67 70anti-parallel
Strand 4
C
73 74anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 94first strand
Strand 2
C
174 178parallel
Strand 3
C
206 210parallel
Strand 4
C
35 40parallel
Strand 5
C
223 228parallel
Strand 6
C
231 237anti-parallel
Strand 7
C
312 313anti-parallel
Strand 8
C
305 306anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 45first strand
Strand 2
D
13 24anti-parallel
Strand 3
D
76 81anti-parallel
Strand 4
D
84 85anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 104first strand
Strand 2
D
182 186parallel
Strand 3
D
214 219parallel
Strand 4
D
50 54parallel
Strand 5
D
231 236parallel
Strand 6
D
239 245anti-parallel
Strand 7
D
320 321anti-parallel
Strand 8
D
314 315anti-parallel
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