Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z27

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z27 entry

There are 2 chains in PDB entry 8Z27 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	PRO 27	VAL 170
b	SER 74	SER 978

There are 35 helices in PDB entry 8Z27. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	100	104	Right-handed 310
Helix 2	AA2	b	220	227	Right-handed alpha
Helix 3	AA3	b	311	318	Right-handed alpha
Helix 4	AA4	b	320	339	Right-handed alpha
Helix 5	AA5	b	370	374	Right-handed alpha
Helix 6	AA6	b	381	400	Right-handed alpha
Helix 7	AA7	b	409	411	Right-handed 310
Helix 8	AA8	b	412	432	Right-handed alpha
Helix 9	AA9	b	436	445	Right-handed alpha
Helix 10	AB1	b	445	455	Right-handed alpha
Helix 11	AB2	b	470	478	Right-handed alpha
Helix 12	AB3	b	479	497	Right-handed alpha
Helix 13	AB4	b	499	513	Right-handed alpha
Helix 14	AB5	b	519	534	Right-handed alpha
Helix 15	AB6	b	542	553	Right-handed alpha
Helix 16	AB7	b	631	635	Right-handed 310
Helix 17	AB8	b	643	657	Right-handed alpha
Helix 18	AB9	b	662	679	Right-handed alpha
Helix 19	AC1	b	683	693	Right-handed alpha
Helix 20	AC2	b	694	696	Right-handed 310
Helix 21	AC3	b	699	718	Right-handed alpha
Helix 22	AC4	b	722	745	Right-handed alpha
Helix 23	AC5	b	754	771	Right-handed alpha
Helix 24	AC6	b	773	789	Right-handed alpha
Helix 25	AC7	b	800	812	Right-handed alpha
Helix 26	AC8	b	813	827	Right-handed alpha
Helix 27	AC9	b	829	841	Right-handed alpha
Helix 28	AD1	b	845	858	Right-handed alpha
Helix 29	AD2	b	863	877	Right-handed alpha
Helix 30	AD3	b	877	891	Right-handed alpha
Helix 31	AD4	b	891	900	Right-handed alpha
Helix 32	AD5	b	905	913	Right-handed alpha
Helix 33	AD6	b	919	933	Right-handed alpha
Helix 34	AD7	b	940	962	Right-handed alpha
Helix 35	AD8	b	962	977	Right-handed alpha

There are 12 sheets in PDB entry 8Z27. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	51	53	first strand
Strand 2	a	38	45	anti-parallel
Strand 3	a	59	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	51	53	first strand
Strand 2	a	38	45	anti-parallel
Strand 3	a	83	88	parallel
Strand 4	a	97	98	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	106	109	first strand
Strand 2	a	141	148	anti-parallel
Strand 3	a	153	161	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	143	146	first strand
Strand 2	b	181	191	anti-parallel
Strand 3	b	108	119	anti-parallel
Strand 4	b	86	97	anti-parallel
Strand 5	b	238	246	parallel
Strand 6	b	270	274	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	125	128	first strand
Strand 2	b	168	171	anti-parallel
Strand 3	b	158	161	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	199	206	first strand
Strand 2	b	209	216	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	250	253	first strand
Strand 2	b	288	291	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	294	295	first strand
Strand 2	b	308	310	anti-parallel
Strand 3	b	348	352	parallel
Strand 4	b	365	369	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	401	402	first strand
Strand 2	b	405	406	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	614	616	first strand
Strand 2	b	567	572	anti-parallel
Strand 3	b	557	561	anti-parallel
Strand 4	b	639	642	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	593	595	first strand
Strand 2	b	607	609	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	602	603	first strand
Strand 2	b	598	599	anti-parallel
Strand 3	b	628	629	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z27

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z27