Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z29 entry

There are 2 chains in PDB entry 8Z29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TRP 458
B
 ASN 3TRP 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8Z29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 24Right-handed alpha
Helix 2
AA2
A
25 30Right-handed alpha
Helix 3
AA3
A
33 41Right-handed alpha
Helix 4
AA4
A
88 105Right-handed alpha
Helix 5
AA5
A
125 141Right-handed alpha
Helix 6
AA6
A
142 144Right-handed 310
Helix 7
AA7
A
158 174Right-handed alpha
Helix 8
AA8
A
195 213Right-handed alpha
Helix 9
AA9
A
230 243Right-handed alpha
Helix 10
AB1
A
266 278Right-handed alpha
Helix 11
AB2
A
279 281Right-handed 310
Helix 12
AB3
A
283 289Right-handed alpha
Helix 13
AB4
A
289 294Right-handed alpha
Helix 14
AB5
A
303 307Right-handed 310
Helix 15
AB6
A
324 334Right-handed alpha
Helix 16
AB7
A
348 362Right-handed alpha
Helix 17
AB8
A
363 367Right-handed 310
Helix 18
AB9
A
372 377Right-handed alpha
Helix 19
AC1
A
378 394Right-handed alpha
Helix 20
AC2
A
398 425Right-handed alpha
Helix 21
AC3
A
434 454Right-handed alpha
Helix 22
AC4
B
7 23Right-handed alpha
Helix 23
AC5
B
25 30Right-handed alpha
Helix 24
AC6
B
33 41Right-handed alpha
Helix 25
AC7
B
88 106Right-handed alpha
Helix 26
AC8
B
125 141Right-handed alpha
Helix 27
AC9
B
142 144Right-handed 310
Helix 28
AD1
B
158 174Right-handed alpha
Helix 29
AD2
B
184 188Right-handed 310
Helix 30
AD3
B
195 213Right-handed alpha
Helix 31
AD4
B
230 243Right-handed alpha
Helix 32
AD5
B
266 276Right-handed alpha
Helix 33
AD6
B
282 287Right-handed alpha
Helix 34
AD7
B
291 295Right-handed alpha
Helix 35
AD8
B
303 307Right-handed 310
Helix 36
AD9
B
324 334Right-handed alpha
Helix 37
AE1
B
348 362Right-handed alpha
Helix 38
AE2
B
363 367Right-handed 310
Helix 39
AE3
B
372 377Right-handed alpha
Helix 40
AE4
B
378 394Right-handed alpha
Helix 41
AE5
B
398 425Right-handed alpha
Helix 42
AE6
B
434 454Right-handed alpha
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There are 7 sheets in PDB entry 8Z29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
112 117parallel
Strand 3
A
60 71anti-parallel
Strand 4
A
45 54anti-parallel
Strand 5
B
45 54anti-parallel
Strand 6
B
60 71anti-parallel
Strand 7
B
112 117anti-parallel
Strand 8
B
81 83parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
149 150parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
223 227parallel
Strand 3
A
313 316parallel
Strand 4
A
338 340parallel
Strand 5
A
369 371parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
256 259anti-parallel
Strand 3
A
296 299anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
149 150parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 247first strand
Strand 2
B
223 226parallel
Strand 3
B
313 315parallel
Strand 4
B
338 339parallel
Strand 5
B
369 370parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 252first strand
Strand 2
B
255 259anti-parallel
Strand 3
B
296 300anti-parallel
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