Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z2C entry

There are 2 chains in PDB entry 8Z2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2TRP 460
A
 ASN 3TRP 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 8Z2C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 24Right-handed alpha
Helix 2
AA2
B
25 30Right-handed alpha
Helix 3
AA3
B
32 41Right-handed alpha
Helix 4
AA4
B
88 106Right-handed alpha
Helix 5
AA5
B
125 141Right-handed alpha
Helix 6
AA6
B
142 144Right-handed 310
Helix 7
AA7
B
158 174Right-handed alpha
Helix 8
AA8
B
184 188Right-handed 310
Helix 9
AA9
B
195 213Right-handed alpha
Helix 10
AB1
B
230 243Right-handed alpha
Helix 11
AB2
B
268 281Right-handed alpha
Helix 12
AB3
B
284 290Right-handed 310
Helix 13
AB4
B
291 297Right-handed alpha
Helix 14
AB5
B
305 309Right-handed 310
Helix 15
AB6
B
326 336Right-handed alpha
Helix 16
AB7
B
350 364Right-handed alpha
Helix 17
AB8
B
365 369Right-handed 310
Helix 18
AB9
B
374 379Right-handed alpha
Helix 19
AC1
B
380 396Right-handed alpha
Helix 20
AC2
B
400 427Right-handed alpha
Helix 21
AC3
B
436 456Right-handed alpha
Helix 22
AC4
A
7 23Right-handed alpha
Helix 23
AC5
A
25 30Right-handed alpha
Helix 24
AC6
A
32 41Right-handed alpha
Helix 25
AC7
A
88 106Right-handed alpha
Helix 26
AC8
A
125 141Right-handed alpha
Helix 27
AC9
A
142 144Right-handed 310
Helix 28
AD1
A
158 174Right-handed alpha
Helix 29
AD2
A
195 213Right-handed alpha
Helix 30
AD3
A
230 243Right-handed alpha
Helix 31
AD4
A
268 281Right-handed alpha
Helix 32
AD5
A
284 290Right-handed 310
Helix 33
AD6
A
291 297Right-handed alpha
Helix 34
AD7
A
306 310Right-handed 310
Helix 35
AD8
A
326 336Right-handed alpha
Helix 36
AD9
A
350 364Right-handed alpha
Helix 37
AE1
A
365 369Right-handed 310
Helix 38
AE2
A
374 379Right-handed alpha
Helix 39
AE3
A
380 396Right-handed alpha
Helix 40
AE4
A
400 427Right-handed alpha
Helix 41
AE5
A
436 456Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8Z2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
77 83parallel
Strand 3
B
112 117parallel
Strand 4
B
60 71anti-parallel
Strand 5
B
45 54anti-parallel
Strand 6
A
45 54anti-parallel
Strand 7
A
60 71anti-parallel
Strand 8
A
112 117anti-parallel
Strand 9
A
77 83parallel
Strand 10
A
149 152parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 302first strand
Strand 2
B
255 259anti-parallel
Strand 3
B
246 251anti-parallel
Strand 4
B
223 227parallel
Strand 5
B
315 318parallel
Strand 6
B
340 342parallel
Strand 7
B
371 373parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 302first strand
Strand 2
A
255 259anti-parallel
Strand 3
A
246 252anti-parallel
Strand 4
A
223 226parallel
Strand 5
A
315 317parallel
Strand 6
A
340 341parallel
Strand 7
A
371 372parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il