Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z2F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z2F entry

There are 6 chains in PDB entry 8Z2F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	TRP 460
B	ASN 3	TRP 460
C	ASN 3	TRP 460
F	ASN 3	TRP 460
D	ASN 3	TRP 460
E	ASN 3	TRP 460

There are121 helices in PDB entry 8Z2F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	24	Right-handed alpha
Helix 2	AA2	A	24	29	Right-handed alpha
Helix 3	AA3	A	30	34	Right-handed 310
Helix 4	AA4	A	35	42	Right-handed alpha
Helix 5	AA5	A	88	106	Right-handed alpha
Helix 6	AA6	A	125	133	Right-handed alpha
Helix 7	AA7	A	140	144	Right-handed 310
Helix 8	AA8	A	158	174	Right-handed alpha
Helix 9	AA9	A	195	214	Right-handed alpha
Helix 10	AB1	A	230	244	Right-handed alpha
Helix 11	AB2	A	268	281	Right-handed alpha
Helix 12	AB3	A	285	290	Right-handed alpha
Helix 13	AB4	A	291	298	Right-handed alpha
Helix 14	AB5	A	305	310	Right-handed alpha
Helix 15	AB6	A	329	336	Right-handed alpha
Helix 16	AB7	A	350	356	Right-handed alpha
Helix 17	AB8	A	365	369	Right-handed 310
Helix 18	AB9	A	380	396	Right-handed alpha
Helix 19	AC1	A	400	426	Right-handed alpha
Helix 20	AC2	A	433	435	Right-handed 310
Helix 21	AC3	A	436	457	Right-handed alpha
Helix 22	AC4	B	7	23	Right-handed alpha
Helix 23	AC5	B	24	30	Right-handed alpha
Helix 24	AC6	B	32	42	Right-handed alpha
Helix 25	AC7	B	89	107	Right-handed alpha
Helix 26	AC8	B	125	136	Right-handed alpha
Helix 27	AC9	B	136	141	Right-handed alpha
Helix 28	AD1	B	159	174	Right-handed alpha
Helix 29	AD2	B	197	214	Right-handed alpha
Helix 30	AD3	B	230	244	Right-handed alpha
Helix 31	AD4	B	268	281	Right-handed alpha
Helix 32	AD5	B	284	290	Right-handed alpha
Helix 33	AD6	B	291	298	Right-handed alpha
Helix 34	AD7	B	305	310	Right-handed alpha
Helix 35	AD8	B	328	337	Right-handed alpha
Helix 36	AD9	B	359	364	Right-handed alpha
Helix 37	AE1	B	380	396	Right-handed alpha
Helix 38	AE2	B	400	426	Right-handed alpha
Helix 39	AE3	B	437	456	Right-handed alpha
Helix 40	AE4	C	7	24	Right-handed alpha
Helix 41	AE5	C	24	30	Right-handed alpha
Helix 42	AE6	C	31	34	Right-handed 310
Helix 43	AE7	C	35	42	Right-handed alpha
Helix 44	AE8	C	88	107	Right-handed alpha
Helix 45	AE9	C	125	141	Right-handed alpha
Helix 46	AF1	C	158	174	Right-handed alpha
Helix 47	AF2	C	195	214	Right-handed alpha
Helix 48	AF3	C	230	244	Right-handed alpha
Helix 49	AF4	C	268	281	Right-handed alpha
Helix 50	AF5	C	284	290	Right-handed alpha
Helix 51	AF6	C	291	297	Right-handed alpha
Helix 52	AF7	C	326	330	Right-handed 310
Helix 53	AF8	C	331	336	Right-handed alpha
Helix 54	AF9	C	350	356	Right-handed alpha
Helix 55	AG1	C	357	364	Right-handed alpha
Helix 56	AG2	C	374	396	Right-handed alpha
Helix 57	AG3	C	400	426	Right-handed alpha
Helix 58	AG4	C	436	456	Right-handed alpha
Helix 59	AG5	F	7	24	Right-handed alpha
Helix 60	AG6	F	25	30	Right-handed alpha
Helix 61	AG7	F	32	35	Right-handed 310
Helix 62	AG8	F	36	41	Right-handed alpha
Helix 63	AG9	F	88	107	Right-handed alpha
Helix 64	AH1	F	125	141	Right-handed alpha
Helix 65	AH2	F	142	144	Right-handed 310
Helix 66	AH3	F	158	174	Right-handed alpha
Helix 67	AH4	F	197	213	Right-handed alpha
Helix 68	AH5	F	230	244	Right-handed alpha
Helix 69	AH6	F	268	281	Right-handed alpha
Helix 70	AH7	F	285	290	Right-handed alpha
Helix 71	AH8	F	291	298	Right-handed alpha
Helix 72	AH9	F	305	310	Right-handed alpha
Helix 73	AI1	F	326	328	Right-handed 310
Helix 74	AI2	F	329	337	Right-handed alpha
Helix 75	AI3	F	351	356	Right-handed alpha
Helix 76	AI4	F	357	362	Right-handed alpha
Helix 77	AI5	F	374	378	Right-handed 310
Helix 78	AI6	F	380	396	Right-handed alpha
Helix 79	AI7	F	400	427	Right-handed alpha
Helix 80	AI8	F	433	435	Right-handed 310
Helix 81	AI9	F	436	457	Right-handed alpha
Helix 82	AJ1	D	7	23	Right-handed alpha
Helix 83	AJ2	D	24	29	Right-handed alpha
Helix 84	AJ3	D	32	41	Right-handed alpha
Helix 85	AJ4	D	88	107	Right-handed alpha
Helix 86	AJ5	D	125	134	Right-handed alpha
Helix 87	AJ6	D	135	141	Right-handed alpha
Helix 88	AJ7	D	142	144	Right-handed 310
Helix 89	AJ8	D	158	174	Right-handed alpha
Helix 90	AJ9	D	184	188	Right-handed 310
Helix 91	AK1	D	195	214	Right-handed alpha
Helix 92	AK2	D	230	244	Right-handed alpha
Helix 93	AK3	D	268	281	Right-handed alpha
Helix 94	AK4	D	285	290	Right-handed alpha
Helix 95	AK5	D	291	296	Right-handed alpha
Helix 96	AK6	D	305	310	Right-handed alpha
Helix 97	AK7	D	328	337	Right-handed alpha
Helix 98	AK8	D	350	359	Right-handed alpha
Helix 99	AK9	D	359	364	Right-handed alpha
Helix 100	AL1	D	379	396	Right-handed alpha
Helix 101	AL2	D	400	426	Right-handed alpha
Helix 102	AL3	D	437	456	Right-handed alpha
Helix 103	AL4	E	7	24	Right-handed alpha
Helix 104	AL5	E	24	29	Right-handed alpha
Helix 105	AL6	E	32	34	Right-handed 310
Helix 106	AL7	E	35	42	Right-handed alpha
Helix 107	AL8	E	88	107	Right-handed alpha
Helix 108	AL9	E	125	141	Right-handed alpha
Helix 109	AM1	E	158	174	Right-handed alpha
Helix 110	AM2	E	196	213	Right-handed alpha
Helix 111	AM3	E	230	244	Right-handed alpha
Helix 112	AM4	E	268	281	Right-handed alpha
Helix 113	AM5	E	284	290	Right-handed alpha
Helix 114	AM6	E	305	310	Right-handed 310
Helix 115	AM7	E	328	336	Right-handed alpha
Helix 116	AM8	E	350	355	Right-handed alpha
Helix 117	AM9	E	359	364	Right-handed alpha
Helix 118	AN1	E	365	369	Right-handed 310
Helix 119	AN2	E	380	396	Right-handed alpha
Helix 120	AN3	E	400	426	Right-handed alpha
Helix 121	AN4	E	437	457	Right-handed alpha

There are 23 sheets in PDB entry 8Z2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	60	69	anti-parallel
Strand 3	A	113	117	anti-parallel
Strand 4	A	77	83	parallel
Strand 5	A	149	153	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	246	247	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	256	258	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	371	372	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	62	69	anti-parallel
Strand 3	B	45	52	anti-parallel
Strand 4	F	45	50	anti-parallel
Strand 5	F	64	71	anti-parallel
Strand 6	F	112	113	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	62	69	anti-parallel
Strand 3	B	45	52	anti-parallel
Strand 4	F	45	50	anti-parallel
Strand 5	F	64	71	anti-parallel
Strand 6	F	115	117	anti-parallel
Strand 7	F	80	82	parallel
Strand 8	F	152	153	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	223	225	parallel
Strand 3	B	315	316	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	256	258	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	342	first strand
Strand 2	B	371	373	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	61	69	anti-parallel
Strand 3	C	50	53	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	61	69	anti-parallel
Strand 3	C	116	117	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	149	153	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	223	225	parallel
Strand 3	C	313	316	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	256	258	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	60	61	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	247	first strand
Strand 2	F	223	225	parallel
Strand 3	F	315	316	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	250	first strand
Strand 2	F	257	258	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	54	first strand
Strand 2	D	60	69	anti-parallel
Strand 3	D	113	116	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	D	223	225	parallel
Strand 3	D	313	316	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	60	61	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	66	first strand
Strand 2	E	116	117	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	149	153	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	249	first strand
Strand 2	E	223	225	parallel
Strand 3	E	313	316	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z2F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z2F