Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z2Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z2Z entry

There are 4 chains in PDB entry 8Z2Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 42	ARG 371
B	PRO 42	ARG 371
C	PRO 42	ARG 371
D	PRO 42	ARG 371

There are 52 helices in PDB entry 8Z2Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	54	Right-handed 310
Helix 2	AA2	A	55	58	Right-handed 310
Helix 3	AA3	A	59	68	Right-handed alpha
Helix 4	AA4	A	69	82	Right-handed alpha
Helix 5	AA5	A	83	88	Right-handed alpha
Helix 6	AA6	A	100	109	Right-handed alpha
Helix 7	AA7	A	122	133	Right-handed alpha
Helix 8	AA8	A	165	171	Right-handed 310
Helix 9	AA9	A	172	184	Right-handed alpha
Helix 10	AB1	A	205	213	Right-handed alpha
Helix 11	AB2	A	214	218	Right-handed 310
Helix 12	AB3	A	224	232	Right-handed alpha
Helix 13	AB4	A	241	245	Right-handed 310
Helix 14	AB5	B	49	54	Right-handed 310
Helix 15	AB6	B	55	58	Right-handed 310
Helix 16	AB7	B	59	68	Right-handed alpha
Helix 17	AB8	B	69	82	Right-handed alpha
Helix 18	AB9	B	83	88	Right-handed alpha
Helix 19	AC1	B	100	109	Right-handed alpha
Helix 20	AC2	B	122	133	Right-handed alpha
Helix 21	AC3	B	165	171	Right-handed 310
Helix 22	AC4	B	172	184	Right-handed alpha
Helix 23	AC5	B	205	213	Right-handed alpha
Helix 24	AC6	B	214	218	Right-handed 310
Helix 25	AC7	B	224	232	Right-handed alpha
Helix 26	AC8	B	241	245	Right-handed 310
Helix 27	AC9	C	49	54	Right-handed 310
Helix 28	AD1	C	55	58	Right-handed 310
Helix 29	AD2	C	59	68	Right-handed alpha
Helix 30	AD3	C	69	82	Right-handed alpha
Helix 31	AD4	C	83	88	Right-handed alpha
Helix 32	AD5	C	100	109	Right-handed alpha
Helix 33	AD6	C	122	133	Right-handed alpha
Helix 34	AD7	C	165	171	Right-handed 310
Helix 35	AD8	C	172	184	Right-handed alpha
Helix 36	AD9	C	205	213	Right-handed alpha
Helix 37	AE1	C	214	218	Right-handed 310
Helix 38	AE2	C	224	232	Right-handed alpha
Helix 39	AE3	C	241	245	Right-handed 310
Helix 40	AE4	D	49	54	Right-handed 310
Helix 41	AE5	D	55	58	Right-handed 310
Helix 42	AE6	D	59	68	Right-handed alpha
Helix 43	AE7	D	69	82	Right-handed alpha
Helix 44	AE8	D	83	88	Right-handed alpha
Helix 45	AE9	D	100	109	Right-handed alpha
Helix 46	AF1	D	122	133	Right-handed alpha
Helix 47	AF2	D	165	171	Right-handed 310
Helix 48	AF3	D	172	184	Right-handed alpha
Helix 49	AF4	D	205	213	Right-handed alpha
Helix 50	AF5	D	214	218	Right-handed 310
Helix 51	AF6	D	224	232	Right-handed alpha
Helix 52	AF7	D	241	245	Right-handed 310

There are 16 sheets in PDB entry 8Z2Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	143	first strand
Strand 2	A	113	118	parallel
Strand 3	A	91	95	parallel
Strand 4	A	156	161	parallel
Strand 5	A	185	192	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	315	325	anti-parallel
Strand 3	A	279	292	anti-parallel
Strand 4	A	195	203	anti-parallel
Strand 5	A	250	256	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	315	325	anti-parallel
Strand 3	A	279	292	anti-parallel
Strand 4	A	299	302	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	274	first strand
Strand 2	A	330	339	anti-parallel
Strand 3	A	347	356	anti-parallel
Strand 4	A	361	370	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	113	118	parallel
Strand 3	B	91	95	parallel
Strand 4	B	156	161	parallel
Strand 5	B	185	192	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	315	325	anti-parallel
Strand 3	B	279	292	anti-parallel
Strand 4	B	195	203	anti-parallel
Strand 5	B	250	256	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	315	325	anti-parallel
Strand 3	B	279	292	anti-parallel
Strand 4	B	299	302	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	274	first strand
Strand 2	B	330	339	anti-parallel
Strand 3	B	347	356	anti-parallel
Strand 4	B	361	370	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	113	118	parallel
Strand 3	C	91	95	parallel
Strand 4	C	156	161	parallel
Strand 5	C	185	192	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	315	325	anti-parallel
Strand 3	C	279	292	anti-parallel
Strand 4	C	195	203	anti-parallel
Strand 5	C	250	256	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	315	325	anti-parallel
Strand 3	C	279	292	anti-parallel
Strand 4	C	299	302	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	274	first strand
Strand 2	C	330	339	anti-parallel
Strand 3	C	347	356	anti-parallel
Strand 4	C	361	370	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	143	first strand
Strand 2	D	113	118	parallel
Strand 3	D	91	95	parallel
Strand 4	D	156	161	parallel
Strand 5	D	185	192	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	315	325	anti-parallel
Strand 3	D	279	292	anti-parallel
Strand 4	D	195	203	anti-parallel
Strand 5	D	250	256	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	315	325	anti-parallel
Strand 3	D	279	292	anti-parallel
Strand 4	D	299	302	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	274	first strand
Strand 2	D	330	339	anti-parallel
Strand 3	D	347	356	anti-parallel
Strand 4	D	361	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z2Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z2Z