Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z40

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z40 entry

There are 6 chains in PDB entry 8Z40 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	PRO 629
B	VAL 3	PRO 629
C	GLU 223	PRO 629
D	LEU 221	PRO 629
E	LEU 221	PRO 629
F	LEU 221	PRO 629

There are138 helices in PDB entry 8Z40. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	23	Right-handed alpha
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	71	89	Right-handed alpha
Helix 4	AA4	A	109	118	Right-handed alpha
Helix 5	AA5	A	145	154	Right-handed alpha
Helix 6	AA6	A	198	211	Right-handed alpha
Helix 7	AA7	A	216	221	Right-handed alpha
Helix 8	AA8	A	222	224	Right-handed 310
Helix 9	AA9	A	226	232	Right-handed 310
Helix 10	AB1	A	233	240	Right-handed alpha
Helix 11	AB2	A	250	256	Right-handed alpha
Helix 12	AB3	A	268	270	Right-handed 310
Helix 13	AB4	A	274	281	Right-handed alpha
Helix 14	AB5	A	286	290	Right-handed 310
Helix 15	AB6	A	310	317	Right-handed alpha
Helix 16	AB7	A	328	347	Right-handed alpha
Helix 17	AB8	A	365	385	Right-handed alpha
Helix 18	AB9	A	409	428	Right-handed alpha
Helix 19	AC1	A	445	451	Right-handed alpha
Helix 20	AC2	A	456	458	Right-handed 310
Helix 21	AC3	A	459	464	Right-handed alpha
Helix 22	AC4	A	477	487	Right-handed alpha
Helix 23	AC5	A	502	513	Right-handed alpha
Helix 24	AC6	A	519	528	Right-handed alpha
Helix 25	AC7	A	554	561	Right-handed alpha
Helix 26	AC8	A	570	575	Right-handed alpha
Helix 27	AC9	A	577	589	Right-handed alpha
Helix 28	AD1	A	593	607	Right-handed alpha
Helix 29	AD2	A	611	624	Right-handed alpha
Helix 30	AD3	B	16	23	Right-handed alpha
Helix 31	AD4	B	41	52	Right-handed alpha
Helix 32	AD5	B	71	90	Right-handed alpha
Helix 33	AD6	B	104	119	Right-handed alpha
Helix 34	AD7	B	134	138	Right-handed 310
Helix 35	AD8	B	145	155	Right-handed alpha
Helix 36	AD9	B	168	173	Right-handed alpha
Helix 37	AE1	B	198	215	Right-handed alpha
Helix 38	AE2	B	217	221	Right-handed 310
Helix 39	AE3	B	226	232	Right-handed 310
Helix 40	AE4	B	233	241	Right-handed alpha
Helix 41	AE5	B	250	258	Right-handed alpha
Helix 42	AE6	B	268	270	Right-handed 310
Helix 43	AE7	B	273	282	Right-handed alpha
Helix 44	AE8	B	286	290	Right-handed 310
Helix 45	AE9	B	310	318	Right-handed alpha
Helix 46	AF1	B	328	347	Right-handed alpha
Helix 47	AF2	B	365	385	Right-handed alpha
Helix 48	AF3	B	409	428	Right-handed alpha
Helix 49	AF4	B	446	451	Right-handed alpha
Helix 50	AF5	B	460	465	Right-handed alpha
Helix 51	AF6	B	477	488	Right-handed alpha
Helix 52	AF7	B	502	513	Right-handed alpha
Helix 53	AF8	B	519	528	Right-handed alpha
Helix 54	AF9	B	554	561	Right-handed alpha
Helix 55	AG1	B	570	575	Right-handed alpha
Helix 56	AG2	B	577	589	Right-handed alpha
Helix 57	AG3	B	593	608	Right-handed alpha
Helix 58	AG4	B	611	624	Right-handed alpha
Helix 59	AG5	C	227	232	Right-handed 310
Helix 60	AG6	C	233	241	Right-handed alpha
Helix 61	AG7	C	248	257	Right-handed alpha
Helix 62	AG8	C	268	270	Right-handed 310
Helix 63	AG9	C	274	282	Right-handed alpha
Helix 64	AH1	C	286	290	Right-handed 310
Helix 65	AH2	C	310	317	Right-handed alpha
Helix 66	AH3	C	322	327	Right-handed alpha
Helix 67	AH4	C	328	347	Right-handed alpha
Helix 68	AH5	C	365	385	Right-handed alpha
Helix 69	AH6	C	409	428	Right-handed alpha
Helix 70	AH7	C	448	454	Right-handed alpha
Helix 71	AH8	C	455	465	Right-handed alpha
Helix 72	AH9	C	477	487	Right-handed alpha
Helix 73	AI1	C	502	513	Right-handed alpha
Helix 74	AI2	C	519	528	Right-handed alpha
Helix 75	AI3	C	554	561	Right-handed alpha
Helix 76	AI4	C	577	589	Right-handed alpha
Helix 77	AI5	C	594	608	Right-handed alpha
Helix 78	AI6	C	611	624	Right-handed alpha
Helix 79	AI7	D	227	231	Right-handed 310
Helix 80	AI8	D	232	241	Right-handed alpha
Helix 81	AI9	D	248	257	Right-handed alpha
Helix 82	AJ1	D	268	270	Right-handed 310
Helix 83	AJ2	D	274	283	Right-handed alpha
Helix 84	AJ3	D	286	290	Right-handed 310
Helix 85	AJ4	D	310	318	Right-handed alpha
Helix 86	AJ5	D	328	347	Right-handed alpha
Helix 87	AJ6	D	365	385	Right-handed alpha
Helix 88	AJ7	D	409	428	Right-handed alpha
Helix 89	AJ8	D	447	458	Right-handed alpha
Helix 90	AJ9	D	458	465	Right-handed alpha
Helix 91	AK1	D	477	487	Right-handed alpha
Helix 92	AK2	D	502	513	Right-handed alpha
Helix 93	AK3	D	519	527	Right-handed alpha
Helix 94	AK4	D	530	534	Right-handed 310
Helix 95	AK5	D	553	561	Right-handed alpha
Helix 96	AK6	D	570	575	Right-handed alpha
Helix 97	AK7	D	577	589	Right-handed alpha
Helix 98	AK8	D	593	608	Right-handed alpha
Helix 99	AK9	D	611	625	Right-handed alpha
Helix 100	AL1	E	227	231	Right-handed 310
Helix 101	AL2	E	233	242	Right-handed alpha
Helix 102	AL3	E	248	257	Right-handed alpha
Helix 103	AL4	E	268	270	Right-handed 310
Helix 104	AL5	E	274	283	Right-handed alpha
Helix 105	AL6	E	286	290	Right-handed 310
Helix 106	AL7	E	310	317	Right-handed alpha
Helix 107	AL8	E	328	347	Right-handed alpha
Helix 108	AL9	E	365	385	Right-handed alpha
Helix 109	AM1	E	409	428	Right-handed alpha
Helix 110	AM2	E	457	465	Right-handed alpha
Helix 111	AM3	E	477	487	Right-handed alpha
Helix 112	AM4	E	502	513	Right-handed alpha
Helix 113	AM5	E	519	527	Right-handed alpha
Helix 114	AM6	E	554	561	Right-handed alpha
Helix 115	AM7	E	570	575	Right-handed alpha
Helix 116	AM8	E	577	589	Right-handed alpha
Helix 117	AM9	E	594	607	Right-handed alpha
Helix 118	AN1	E	611	625	Right-handed alpha
Helix 119	AN2	F	227	232	Right-handed 310
Helix 120	AN3	F	233	241	Right-handed alpha
Helix 121	AN4	F	248	258	Right-handed alpha
Helix 122	AN5	F	268	270	Right-handed 310
Helix 123	AN6	F	274	282	Right-handed alpha
Helix 124	AN7	F	286	290	Right-handed 310
Helix 125	AN8	F	310	317	Right-handed alpha
Helix 126	AN9	F	328	347	Right-handed alpha
Helix 127	AO1	F	365	385	Right-handed alpha
Helix 128	AO2	F	409	428	Right-handed alpha
Helix 129	AO3	F	447	462	Right-handed alpha
Helix 130	AO4	F	463	465	Right-handed 310
Helix 131	AO5	F	477	487	Right-handed alpha
Helix 132	AO6	F	502	513	Right-handed alpha
Helix 133	AO7	F	519	527	Right-handed alpha
Helix 134	AO8	F	554	561	Right-handed alpha
Helix 135	AO9	F	570	575	Right-handed alpha
Helix 136	AP1	F	577	589	Right-handed alpha
Helix 137	AP2	F	593	607	Right-handed alpha
Helix 138	AP3	F	611	624	Right-handed alpha

There are 11 sheets in PDB entry 8Z40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	31	36	parallel
Strand 3	A	6	8	parallel
Strand 4	A	97	98	parallel
Strand 5	A	122	126	parallel
Strand 6	A	159	161	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	187	first strand
Strand 2	A	190	194	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	266	first strand
Strand 2	A	348	355	parallel
Strand 3	A	395	400	parallel
Strand 4	A	436	440	parallel
Strand 5	A	467	472	parallel
Strand 6	A	492	495	parallel
Strand 7	A	515	518	parallel
Strand 8	A	563	566	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	31	36	parallel
Strand 3	B	57	62	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	123	128	parallel
Strand 3	B	157	163	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	192	194	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	266	first strand
Strand 2	B	348	355	parallel
Strand 3	B	395	401	parallel
Strand 4	B	436	440	parallel
Strand 5	B	467	472	parallel
Strand 6	B	492	495	parallel
Strand 7	B	515	518	parallel
Strand 8	B	563	566	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	266	first strand
Strand 2	C	348	355	parallel
Strand 3	C	395	400	parallel
Strand 4	C	436	440	parallel
Strand 5	C	467	472	parallel
Strand 6	C	492	495	parallel
Strand 7	C	515	518	parallel
Strand 8	C	563	566	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	266	first strand
Strand 2	D	348	355	parallel
Strand 3	D	395	401	parallel
Strand 4	D	436	440	parallel
Strand 5	D	467	472	parallel
Strand 6	D	492	495	parallel
Strand 7	D	515	518	parallel
Strand 8	D	563	566	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	266	first strand
Strand 2	E	348	355	parallel
Strand 3	E	395	401	parallel
Strand 4	E	436	440	parallel
Strand 5	E	467	471	parallel
Strand 6	E	492	494	parallel
Strand 7	E	515	518	parallel
Strand 8	E	563	566	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	266	first strand
Strand 2	F	348	355	parallel
Strand 3	F	395	400	parallel
Strand 4	F	436	441	parallel
Strand 5	F	467	472	parallel
Strand 6	F	492	495	parallel
Strand 7	F	515	518	parallel
Strand 8	F	563	566	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z40

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z40