Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z43

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z43 entry

There are 2 chains in PDB entry 8Z43 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 20	ARG 550
B	VAL 20	ARG 550

There are 38 helices in PDB entry 8Z43. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	62	69	Right-handed alpha
Helix 3	AA3	A	80	84	Right-handed alpha
Helix 4	AA4	A	92	106	Right-handed alpha
Helix 5	AA5	A	126	131	Right-handed alpha
Helix 6	AA6	A	154	177	Right-handed alpha
Helix 7	AA7	A	200	208	Right-handed alpha
Helix 8	AA8	A	212	222	Right-handed alpha
Helix 9	AA9	A	223	226	Right-handed 310
Helix 10	AB1	A	227	237	Right-handed alpha
Helix 11	AB2	A	244	250	Right-handed alpha
Helix 12	AB3	A	252	279	Right-handed alpha
Helix 13	AB4	A	306	308	Right-handed 310
Helix 14	AB5	A	309	317	Right-handed alpha
Helix 15	AB6	A	331	340	Right-handed alpha
Helix 16	AB7	A	354	366	Right-handed alpha
Helix 17	AB8	A	374	379	Right-handed 310
Helix 18	AB9	A	381	401	Right-handed alpha
Helix 19	AC1	A	492	497	Right-handed 310
Helix 20	AC2	B	55	61	Right-handed alpha
Helix 21	AC3	B	62	69	Right-handed alpha
Helix 22	AC4	B	80	84	Right-handed alpha
Helix 23	AC5	B	92	106	Right-handed alpha
Helix 24	AC6	B	126	131	Right-handed alpha
Helix 25	AC7	B	154	177	Right-handed alpha
Helix 26	AC8	B	200	208	Right-handed alpha
Helix 27	AC9	B	212	222	Right-handed alpha
Helix 28	AD1	B	223	226	Right-handed 310
Helix 29	AD2	B	227	237	Right-handed alpha
Helix 30	AD3	B	244	250	Right-handed alpha
Helix 31	AD4	B	252	279	Right-handed alpha
Helix 32	AD5	B	306	308	Right-handed 310
Helix 33	AD6	B	309	317	Right-handed alpha
Helix 34	AD7	B	331	340	Right-handed alpha
Helix 35	AD8	B	354	366	Right-handed alpha
Helix 36	AD9	B	374	379	Right-handed 310
Helix 37	AE1	B	381	402	Right-handed alpha
Helix 38	AE2	B	492	497	Right-handed 310

There are 14 sheets in PDB entry 8Z43. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	26	first strand
Strand 2	A	32	36	anti-parallel
Strand 3	A	39	41	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	189	first strand
Strand 2	A	108	118	parallel
Strand 3	A	73	79	parallel
Strand 4	A	43	47	parallel
Strand 5	A	369	372	parallel
Strand 6	A	347	351	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	146	150	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	288	first strand
Strand 2	A	322	326	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	411	first strand
Strand 2	A	438	445	anti-parallel
Strand 3	A	448	454	anti-parallel
Strand 4	A	541	550	anti-parallel
Strand 5	A	468	479	anti-parallel
Strand 6	A	485	491	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	423	first strand
Strand 2	A	426	432	anti-parallel
Strand 3	A	456	462	anti-parallel
Strand 4	A	502	504	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	517	first strand
Strand 2	A	532	539	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	26	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	39	41	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	108	118	parallel
Strand 3	B	73	79	parallel
Strand 4	B	43	47	parallel
Strand 5	B	369	372	parallel
Strand 6	B	347	351	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	146	150	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	288	first strand
Strand 2	B	322	326	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	411	first strand
Strand 2	B	438	445	anti-parallel
Strand 3	B	448	454	anti-parallel
Strand 4	B	541	550	anti-parallel
Strand 5	B	468	479	anti-parallel
Strand 6	B	485	491	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	423	first strand
Strand 2	B	426	432	anti-parallel
Strand 3	B	456	462	anti-parallel
Strand 4	B	502	504	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	517	first strand
Strand 2	B	532	539	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z43

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z43