Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z48 entry

There are 4 chains in PDB entry 8Z48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 20	ARG 550
B	VAL 20	ARG 550
C	VAL 20	ARG 550
D	VAL 20	ARG 550

There are 77 helices in PDB entry 8Z48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	62	69	Right-handed alpha
Helix 3	AA3	A	80	84	Right-handed alpha
Helix 4	AA4	A	92	106	Right-handed alpha
Helix 5	AA5	A	126	131	Right-handed alpha
Helix 6	AA6	A	154	177	Right-handed alpha
Helix 7	AA7	A	200	207	Right-handed alpha
Helix 8	AA8	A	212	222	Right-handed alpha
Helix 9	AA9	A	223	226	Right-handed 310
Helix 10	AB1	A	227	237	Right-handed alpha
Helix 11	AB2	A	244	250	Right-handed alpha
Helix 12	AB3	A	252	279	Right-handed alpha
Helix 13	AB4	A	306	308	Right-handed 310
Helix 14	AB5	A	309	317	Right-handed alpha
Helix 15	AB6	A	331	340	Right-handed alpha
Helix 16	AB7	A	354	366	Right-handed alpha
Helix 17	AB8	A	374	379	Right-handed 310
Helix 18	AB9	A	381	401	Right-handed alpha
Helix 19	AC1	A	492	497	Right-handed 310
Helix 20	AC2	B	55	61	Right-handed alpha
Helix 21	AC3	B	62	69	Right-handed alpha
Helix 22	AC4	B	80	84	Right-handed alpha
Helix 23	AC5	B	92	106	Right-handed alpha
Helix 24	AC6	B	126	131	Right-handed alpha
Helix 25	AC7	B	154	177	Right-handed alpha
Helix 26	AC8	B	200	207	Right-handed alpha
Helix 27	AC9	B	212	223	Right-handed alpha
Helix 28	AD1	B	224	226	Right-handed 310
Helix 29	AD2	B	227	237	Right-handed alpha
Helix 30	AD3	B	244	250	Right-handed alpha
Helix 31	AD4	B	252	279	Right-handed alpha
Helix 32	AD5	B	306	308	Right-handed 310
Helix 33	AD6	B	309	317	Right-handed alpha
Helix 34	AD7	B	331	340	Right-handed alpha
Helix 35	AD8	B	354	366	Right-handed alpha
Helix 36	AD9	B	374	379	Right-handed 310
Helix 37	AE1	B	381	401	Right-handed alpha
Helix 38	AE2	B	492	497	Right-handed 310
Helix 39	AE3	C	55	61	Right-handed alpha
Helix 40	AE4	C	62	69	Right-handed alpha
Helix 41	AE5	C	80	84	Right-handed alpha
Helix 42	AE6	C	92	106	Right-handed alpha
Helix 43	AE7	C	126	131	Right-handed alpha
Helix 44	AE8	C	154	177	Right-handed alpha
Helix 45	AE9	C	200	207	Right-handed alpha
Helix 46	AF1	C	212	222	Right-handed alpha
Helix 47	AF2	C	223	226	Right-handed 310
Helix 48	AF3	C	227	237	Right-handed alpha
Helix 49	AF4	C	244	250	Right-handed alpha
Helix 50	AF5	C	252	279	Right-handed alpha
Helix 51	AF6	C	306	308	Right-handed 310
Helix 52	AF7	C	309	317	Right-handed alpha
Helix 53	AF8	C	331	340	Right-handed alpha
Helix 54	AF9	C	354	366	Right-handed alpha
Helix 55	AG1	C	374	379	Right-handed 310
Helix 56	AG2	C	381	394	Right-handed alpha
Helix 57	AG3	C	394	401	Right-handed alpha
Helix 58	AG4	C	492	497	Right-handed 310
Helix 59	AG5	D	55	61	Right-handed alpha
Helix 60	AG6	D	62	69	Right-handed alpha
Helix 61	AG7	D	80	84	Right-handed alpha
Helix 62	AG8	D	92	106	Right-handed alpha
Helix 63	AG9	D	126	131	Right-handed alpha
Helix 64	AH1	D	154	177	Right-handed alpha
Helix 65	AH2	D	200	207	Right-handed alpha
Helix 66	AH3	D	212	222	Right-handed alpha
Helix 67	AH4	D	223	226	Right-handed 310
Helix 68	AH5	D	227	237	Right-handed alpha
Helix 69	AH6	D	244	250	Right-handed alpha
Helix 70	AH7	D	252	279	Right-handed alpha
Helix 71	AH8	D	306	308	Right-handed 310
Helix 72	AH9	D	309	317	Right-handed alpha
Helix 73	AI1	D	331	340	Right-handed alpha
Helix 74	AI2	D	354	366	Right-handed alpha
Helix 75	AI3	D	374	379	Right-handed 310
Helix 76	AI4	D	381	401	Right-handed alpha
Helix 77	AI5	D	492	497	Right-handed 310

There are 24 sheets in PDB entry 8Z48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	26	first strand
Strand 2	A	32	36	anti-parallel
Strand 3	A	39	41	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	189	first strand
Strand 2	A	108	118	parallel
Strand 3	A	73	79	parallel
Strand 4	A	43	47	parallel
Strand 5	A	369	372	parallel
Strand 6	A	347	351	parallel
Strand 7	A	322	327	parallel
Strand 8	A	284	288	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	146	150	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	411	first strand
Strand 2	A	438	445	anti-parallel
Strand 3	A	448	454	anti-parallel
Strand 4	A	541	550	anti-parallel
Strand 5	A	468	479	anti-parallel
Strand 6	A	485	491	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	423	first strand
Strand 2	A	426	432	anti-parallel
Strand 3	A	456	462	anti-parallel
Strand 4	A	502	504	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	26	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	39	41	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	108	118	parallel
Strand 3	B	73	79	parallel
Strand 4	B	43	47	parallel
Strand 5	B	369	372	parallel
Strand 6	B	347	351	parallel
Strand 7	B	322	327	parallel
Strand 8	B	284	288	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	146	150	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	411	first strand
Strand 2	B	438	445	anti-parallel
Strand 3	B	448	454	anti-parallel
Strand 4	B	541	550	anti-parallel
Strand 5	B	468	479	anti-parallel
Strand 6	B	485	491	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	423	first strand
Strand 2	B	426	432	anti-parallel
Strand 3	B	456	462	anti-parallel
Strand 4	B	502	504	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	26	first strand
Strand 2	C	32	36	anti-parallel
Strand 3	C	39	41	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	189	first strand
Strand 2	C	108	118	parallel
Strand 3	C	73	79	parallel
Strand 4	C	43	47	parallel
Strand 5	C	369	370	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	140	first strand
Strand 2	C	146	150	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	288	first strand
Strand 2	C	322	327	parallel
Strand 3	C	350	351	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	411	first strand
Strand 2	C	438	445	anti-parallel
Strand 3	C	448	454	anti-parallel
Strand 4	C	541	550	anti-parallel
Strand 5	C	468	479	anti-parallel
Strand 6	C	485	491	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	423	first strand
Strand 2	C	426	432	anti-parallel
Strand 3	C	456	462	anti-parallel
Strand 4	C	502	504	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	508	first strand
Strand 2	C	538	539	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	26	first strand
Strand 2	D	32	36	anti-parallel
Strand 3	D	39	41	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	189	first strand
Strand 2	D	108	118	parallel
Strand 3	D	73	79	parallel
Strand 4	D	43	47	parallel
Strand 5	D	369	372	parallel
Strand 6	D	347	351	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	140	first strand
Strand 2	D	146	150	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	288	first strand
Strand 2	D	322	326	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	411	first strand
Strand 2	D	438	445	anti-parallel
Strand 3	D	448	454	anti-parallel
Strand 4	D	541	550	anti-parallel
Strand 5	D	468	479	anti-parallel
Strand 6	D	485	491	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	423	first strand
Strand 2	D	426	432	anti-parallel
Strand 3	D	456	462	anti-parallel
Strand 4	D	502	504	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	508	first strand
Strand 2	D	538	539	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z48

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z48