Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z4D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z4D entry

There are 34 chains in PDB entry 8Z4D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ALA 255	ALA 452
2	ALA 255	ALA 452
3	ALA 255	ALA 452
4	ALA 255	ALA 452
5	ALA 255	ALA 452
6	ALA 255	ALA 452
7	ALA 255	ALA 452
8	ALA 255	ALA 452
9	ALA 255	ALA 452
A	ALA 255	ALA 452
B	ALA 255	ALA 452
C	ALA 255	ALA 452
D	ALA 255	ALA 452
E	ALA 255	ALA 452
F	ALA 255	ALA 452
G	ALA 255	ALA 452
H	ALA 255	ALA 452
I	ALA 255	ALA 452
J	ALA 255	ALA 452
K	ALA 255	ALA 452
L	ALA 255	ALA 452
M	ALA 255	ALA 452
N	ALA 255	ALA 452
O	ALA 255	ALA 452
P	ALA 255	ALA 452
Q	ALA 255	ALA 452
R	ALA 255	ALA 452
S	ALA 255	ALA 452
T	ALA 255	ALA 452
U	ALA 255	ALA 452
V	ALA 255	ALA 452
W	ALA 255	ALA 452
X	ALA 255	ALA 452
Y	ALA 255	ALA 452

There are 68 helices in PDB entry 8Z4D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	255	286	Right-handed alpha
Helix 2	AA2	1	419	435	Right-handed alpha
Helix 3	AA3	2	256	286	Right-handed alpha
Helix 4	AA4	2	419	435	Right-handed alpha
Helix 5	AA5	3	256	286	Right-handed alpha
Helix 6	AA6	3	419	435	Right-handed alpha
Helix 7	AA7	4	256	286	Right-handed alpha
Helix 8	AA8	4	419	435	Right-handed alpha
Helix 9	AA9	5	256	286	Right-handed alpha
Helix 10	AB1	5	419	435	Right-handed alpha
Helix 11	AB2	6	256	286	Right-handed alpha
Helix 12	AB3	6	419	435	Right-handed alpha
Helix 13	AB4	7	256	286	Right-handed alpha
Helix 14	AB5	7	419	435	Right-handed alpha
Helix 15	AB6	8	256	286	Right-handed alpha
Helix 16	AB7	8	419	435	Right-handed alpha
Helix 17	AB8	9	256	286	Right-handed alpha
Helix 18	AB9	9	419	435	Right-handed alpha
Helix 19	AC1	A	256	286	Right-handed alpha
Helix 20	AC2	A	419	435	Right-handed alpha
Helix 21	AC3	B	256	286	Right-handed alpha
Helix 22	AC4	B	419	435	Right-handed alpha
Helix 23	AC5	C	256	286	Right-handed alpha
Helix 24	AC6	C	419	435	Right-handed alpha
Helix 25	AC7	D	256	286	Right-handed alpha
Helix 26	AC8	D	419	435	Right-handed alpha
Helix 27	AC9	E	256	286	Right-handed alpha
Helix 28	AD1	E	419	435	Right-handed alpha
Helix 29	AD2	F	256	286	Right-handed alpha
Helix 30	AD3	F	419	435	Right-handed alpha
Helix 31	AD4	G	256	286	Right-handed alpha
Helix 32	AD5	G	419	435	Right-handed alpha
Helix 33	AD6	H	256	286	Right-handed alpha
Helix 34	AD7	H	419	435	Right-handed alpha
Helix 35	AD8	I	256	286	Right-handed alpha
Helix 36	AD9	I	419	435	Right-handed alpha
Helix 37	AE1	J	256	286	Right-handed alpha
Helix 38	AE2	J	419	435	Right-handed alpha
Helix 39	AE3	K	256	286	Right-handed alpha
Helix 40	AE4	K	419	435	Right-handed alpha
Helix 41	AE5	L	256	286	Right-handed alpha
Helix 42	AE6	L	419	435	Right-handed alpha
Helix 43	AE7	M	256	286	Right-handed alpha
Helix 44	AE8	M	419	435	Right-handed alpha
Helix 45	AE9	N	256	286	Right-handed alpha
Helix 46	AF1	N	419	435	Right-handed alpha
Helix 47	AF2	O	256	286	Right-handed alpha
Helix 48	AF3	O	419	435	Right-handed alpha
Helix 49	AF4	P	256	286	Right-handed alpha
Helix 50	AF5	P	419	435	Right-handed alpha
Helix 51	AF6	Q	256	286	Right-handed alpha
Helix 52	AF7	Q	419	435	Right-handed alpha
Helix 53	AF8	R	256	286	Right-handed alpha
Helix 54	AF9	R	419	435	Right-handed alpha
Helix 55	AG1	S	256	286	Right-handed alpha
Helix 56	AG2	S	419	435	Right-handed alpha
Helix 57	AG3	T	256	286	Right-handed alpha
Helix 58	AG4	T	419	435	Right-handed alpha
Helix 59	AG5	U	256	286	Right-handed alpha
Helix 60	AG6	U	419	435	Right-handed alpha
Helix 61	AG7	V	256	286	Right-handed alpha
Helix 62	AG8	V	419	435	Right-handed alpha
Helix 63	AG9	W	256	286	Right-handed alpha
Helix 64	AH1	W	419	435	Right-handed alpha
Helix 65	AH2	X	256	286	Right-handed alpha
Helix 66	AH3	X	419	435	Right-handed alpha
Helix 67	AH4	Y	256	286	Right-handed alpha
Helix 68	AH5	Y	419	435	Right-handed alpha

There are 36 sheets in PDB entry 8Z4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	290	298	first strand
Strand 2	1	391	401	anti-parallel
Strand 3	1	443	449	parallel

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There are 69 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	302	310	first strand
Strand 2	1	379	385	anti-parallel
Strand 3	2	302	310	anti-parallel
Strand 4	2	379	385	anti-parallel
Strand 5	3	302	310	anti-parallel
Strand 6	3	379	385	anti-parallel
Strand 7	4	302	310	anti-parallel
Strand 8	4	379	385	anti-parallel
Strand 9	5	302	310	anti-parallel
Strand 10	5	379	385	anti-parallel
Strand 11	6	302	310	anti-parallel
Strand 12	6	379	385	anti-parallel
Strand 13	7	302	310	anti-parallel
Strand 14	7	379	385	anti-parallel
Strand 15	8	302	310	anti-parallel
Strand 16	8	379	385	anti-parallel
Strand 17	9	302	310	anti-parallel
Strand 18	9	379	385	anti-parallel
Strand 19	A	302	310	anti-parallel
Strand 20	A	379	385	anti-parallel
Strand 21	B	302	310	anti-parallel
Strand 22	B	379	385	anti-parallel
Strand 23	C	302	310	anti-parallel
Strand 24	C	379	385	anti-parallel
Strand 25	D	302	310	anti-parallel
Strand 26	D	379	385	anti-parallel
Strand 27	E	302	310	anti-parallel
Strand 28	E	379	385	anti-parallel
Strand 29	F	302	310	anti-parallel
Strand 30	F	379	385	anti-parallel
Strand 31	G	302	310	anti-parallel
Strand 32	G	379	385	anti-parallel
Strand 33	H	302	310	anti-parallel
Strand 34	H	379	385	anti-parallel
Strand 35	I	302	310	anti-parallel
Strand 36	I	379	385	anti-parallel
Strand 37	J	302	310	anti-parallel
Strand 38	J	379	385	anti-parallel
Strand 39	K	302	310	anti-parallel
Strand 40	K	379	385	anti-parallel
Strand 41	L	302	310	anti-parallel
Strand 42	L	379	385	anti-parallel
Strand 43	M	302	310	anti-parallel
Strand 44	M	379	385	anti-parallel
Strand 45	N	302	310	anti-parallel
Strand 46	N	379	385	anti-parallel
Strand 47	O	302	310	anti-parallel
Strand 48	O	379	385	anti-parallel
Strand 49	P	302	310	anti-parallel
Strand 50	P	379	385	anti-parallel
Strand 51	Q	302	310	anti-parallel
Strand 52	Q	379	385	anti-parallel
Strand 53	R	302	310	anti-parallel
Strand 54	R	379	385	anti-parallel
Strand 55	S	302	310	anti-parallel
Strand 56	S	379	385	anti-parallel
Strand 57	T	302	310	anti-parallel
Strand 58	T	379	385	anti-parallel
Strand 59	U	302	310	anti-parallel
Strand 60	U	379	385	anti-parallel
Strand 61	V	302	310	anti-parallel
Strand 62	V	379	385	anti-parallel
Strand 63	W	302	310	anti-parallel
Strand 64	W	379	385	anti-parallel
Strand 65	X	302	310	anti-parallel
Strand 66	X	379	385	anti-parallel
Strand 67	Y	302	310	anti-parallel
Strand 68	Y	379	385	anti-parallel
Strand 69	1	302	310	anti-parallel

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There are 69 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	316	325	first strand
Strand 2	1	368	376	anti-parallel
Strand 3	Y	316	325	anti-parallel
Strand 4	Y	368	376	anti-parallel
Strand 5	X	316	325	anti-parallel
Strand 6	X	368	376	anti-parallel
Strand 7	W	316	325	anti-parallel
Strand 8	W	368	376	anti-parallel
Strand 9	V	316	325	anti-parallel
Strand 10	V	368	376	anti-parallel
Strand 11	U	316	325	anti-parallel
Strand 12	U	368	376	anti-parallel
Strand 13	T	316	325	anti-parallel
Strand 14	T	368	376	anti-parallel
Strand 15	S	316	325	anti-parallel
Strand 16	S	368	376	anti-parallel
Strand 17	R	316	325	anti-parallel
Strand 18	R	368	376	anti-parallel
Strand 19	Q	316	325	anti-parallel
Strand 20	Q	368	376	anti-parallel
Strand 21	P	316	325	anti-parallel
Strand 22	P	368	376	anti-parallel
Strand 23	O	316	325	anti-parallel
Strand 24	O	368	376	anti-parallel
Strand 25	N	316	325	anti-parallel
Strand 26	N	368	376	anti-parallel
Strand 27	M	316	325	anti-parallel
Strand 28	M	368	376	anti-parallel
Strand 29	L	316	325	anti-parallel
Strand 30	L	368	376	anti-parallel
Strand 31	K	316	325	anti-parallel
Strand 32	K	368	376	anti-parallel
Strand 33	J	316	325	anti-parallel
Strand 34	J	368	376	anti-parallel
Strand 35	I	316	325	anti-parallel
Strand 36	I	368	376	anti-parallel
Strand 37	H	316	325	anti-parallel
Strand 38	H	368	376	anti-parallel
Strand 39	G	316	325	anti-parallel
Strand 40	G	368	376	anti-parallel
Strand 41	F	316	325	anti-parallel
Strand 42	F	368	376	anti-parallel
Strand 43	E	316	325	anti-parallel
Strand 44	E	368	376	anti-parallel
Strand 45	D	316	325	anti-parallel
Strand 46	D	368	376	anti-parallel
Strand 47	C	316	325	anti-parallel
Strand 48	C	368	376	anti-parallel
Strand 49	B	316	325	anti-parallel
Strand 50	B	368	376	anti-parallel
Strand 51	A	316	325	anti-parallel
Strand 52	A	368	376	anti-parallel
Strand 53	9	316	325	anti-parallel
Strand 54	9	368	376	anti-parallel
Strand 55	8	316	325	anti-parallel
Strand 56	8	368	376	anti-parallel
Strand 57	7	316	325	anti-parallel
Strand 58	7	368	376	anti-parallel
Strand 59	6	316	325	anti-parallel
Strand 60	6	368	376	anti-parallel
Strand 61	5	316	325	anti-parallel
Strand 62	5	368	376	anti-parallel
Strand 63	4	316	325	anti-parallel
Strand 64	4	368	376	anti-parallel
Strand 65	3	316	325	anti-parallel
Strand 66	3	368	376	anti-parallel
Strand 67	2	316	325	anti-parallel
Strand 68	2	368	376	anti-parallel
Strand 69	1	316	325	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	290	298	first strand
Strand 2	2	391	401	anti-parallel
Strand 3	2	443	449	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	290	298	first strand
Strand 2	3	391	401	anti-parallel
Strand 3	3	443	449	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	290	298	first strand
Strand 2	4	391	401	anti-parallel
Strand 3	4	443	449	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	290	298	first strand
Strand 2	5	391	401	anti-parallel
Strand 3	5	443	449	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	290	298	first strand
Strand 2	6	391	401	anti-parallel
Strand 3	6	443	449	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	290	298	first strand
Strand 2	7	391	401	anti-parallel
Strand 3	7	443	449	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	290	298	first strand
Strand 2	8	391	401	anti-parallel
Strand 3	8	443	449	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	290	298	first strand
Strand 2	9	391	401	anti-parallel
Strand 3	9	443	449	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	298	first strand
Strand 2	A	391	401	anti-parallel
Strand 3	A	443	449	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	298	first strand
Strand 2	B	391	401	anti-parallel
Strand 3	B	443	449	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	298	first strand
Strand 2	C	391	401	anti-parallel
Strand 3	C	443	449	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	298	first strand
Strand 2	D	391	401	anti-parallel
Strand 3	D	443	449	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	298	first strand
Strand 2	E	391	401	anti-parallel
Strand 3	E	443	449	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	290	298	first strand
Strand 2	F	391	401	anti-parallel
Strand 3	F	443	449	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	290	298	first strand
Strand 2	G	391	401	anti-parallel
Strand 3	G	443	449	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	290	298	first strand
Strand 2	H	391	401	anti-parallel
Strand 3	H	443	449	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	290	298	first strand
Strand 2	I	391	401	anti-parallel
Strand 3	I	443	449	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	290	298	first strand
Strand 2	J	391	401	anti-parallel
Strand 3	J	443	449	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	290	298	first strand
Strand 2	K	391	401	anti-parallel
Strand 3	K	443	449	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	290	298	first strand
Strand 2	L	391	401	anti-parallel
Strand 3	L	443	449	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	290	298	first strand
Strand 2	M	391	401	anti-parallel
Strand 3	M	443	449	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	290	298	first strand
Strand 2	N	391	401	anti-parallel
Strand 3	N	443	449	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	290	298	first strand
Strand 2	O	391	401	anti-parallel
Strand 3	O	443	449	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	290	298	first strand
Strand 2	P	391	401	anti-parallel
Strand 3	P	443	449	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	290	298	first strand
Strand 2	Q	391	401	anti-parallel
Strand 3	Q	443	449	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	290	298	first strand
Strand 2	R	391	401	anti-parallel
Strand 3	R	443	449	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	290	298	first strand
Strand 2	S	391	401	anti-parallel
Strand 3	S	443	449	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	290	298	first strand
Strand 2	T	391	401	anti-parallel
Strand 3	T	443	449	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	290	298	first strand
Strand 2	U	391	401	anti-parallel
Strand 3	U	443	449	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	290	298	first strand
Strand 2	V	391	401	anti-parallel
Strand 3	V	443	449	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	290	298	first strand
Strand 2	W	391	401	anti-parallel
Strand 3	W	443	449	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	290	298	first strand
Strand 2	X	391	401	anti-parallel
Strand 3	X	443	449	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	290	298	first strand
Strand 2	Y	391	401	anti-parallel
Strand 3	Y	443	449	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z4D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z4D