Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z4F entry

There are 2 chains in PDB entry 8Z4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 82LYS 303
A
 MET 1VAL 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8Z4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
90 108Right-handed alpha
Helix 2
AA2
B
126 144Right-handed alpha
Helix 3
AA3
B
158 171Right-handed alpha
Helix 4
AA4
B
175 187Right-handed alpha
Helix 5
AA5
B
198 207Right-handed alpha
Helix 6
AA6
B
212 227Right-handed alpha
Helix 7
AA7
B
264 268Right-handed 310
Helix 8
AA8
B
272 278Right-handed alpha
Helix 9
AA9
A
8 26Right-handed alpha
Helix 10
AB1
A
44 62Right-handed alpha
Helix 11
AB2
A
90 108Right-handed alpha
Helix 12
AB3
A
126 143Right-handed alpha
Helix 13
AB4
A
158 171Right-handed alpha
Helix 14
AB5
A
175 187Right-handed alpha
Helix 15
AB6
A
199 208Right-handed alpha
Helix 16
AB7
A
212 227Right-handed alpha
Helix 17
AB8
A
264 268Right-handed 310
Helix 18
AB9
A
272 278Right-handed alpha
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There are 8 sheets in PDB entry 8Z4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
149 151anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 115first strand
Strand 2
B
123 125anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 271first strand
Strand 2
B
245 254anti-parallel
Strand 3
B
230 239anti-parallel
Strand 4
B
292 297anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
67 69anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
41 43anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
149 151anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
123 125anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
246 254anti-parallel
Strand 3
A
230 238anti-parallel
Strand 4
A
294 297anti-parallel
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