Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z4H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z4H entry

There are 4 chains in PDB entry 8Z4H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 228
B	MET 1	ALA 228
C	MET 1	ALA 228
D	MET 1	ALA 228

There are 36 helices in PDB entry 8Z4H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	22	Right-handed alpha
Helix 2	AA2	A	44	63	Right-handed alpha
Helix 3	AA3	A	89	102	Right-handed alpha
Helix 4	AA4	A	107	116	Right-handed alpha
Helix 5	AA5	A	124	132	Right-handed alpha
Helix 6	AA6	A	133	135	Right-handed 310
Helix 7	AA7	A	145	155	Right-handed alpha
Helix 8	AA8	A	166	169	Right-handed 310
Helix 9	AA9	A	208	213	Right-handed alpha
Helix 10	AB1	B	6	21	Right-handed alpha
Helix 11	AB2	B	44	63	Right-handed alpha
Helix 12	AB3	B	89	102	Right-handed alpha
Helix 13	AB4	B	107	116	Right-handed alpha
Helix 14	AB5	B	124	132	Right-handed alpha
Helix 15	AB6	B	133	135	Right-handed 310
Helix 16	AB7	B	145	155	Right-handed alpha
Helix 17	AB8	B	166	169	Right-handed 310
Helix 18	AB9	B	208	213	Right-handed alpha
Helix 19	AC1	C	6	21	Right-handed alpha
Helix 20	AC2	C	44	63	Right-handed alpha
Helix 21	AC3	C	89	102	Right-handed alpha
Helix 22	AC4	C	107	116	Right-handed alpha
Helix 23	AC5	C	124	132	Right-handed alpha
Helix 24	AC6	C	133	135	Right-handed 310
Helix 25	AC7	C	145	155	Right-handed alpha
Helix 26	AC8	C	166	169	Right-handed 310
Helix 27	AC9	C	208	214	Right-handed alpha
Helix 28	AD1	D	6	21	Right-handed alpha
Helix 29	AD2	D	44	63	Right-handed alpha
Helix 30	AD3	D	89	102	Right-handed alpha
Helix 31	AD4	D	107	116	Right-handed alpha
Helix 32	AD5	D	124	132	Right-handed alpha
Helix 33	AD6	D	133	135	Right-handed 310
Helix 34	AD7	D	145	155	Right-handed alpha
Helix 35	AD8	D	166	169	Right-handed 310
Helix 36	AD9	D	208	213	Right-handed alpha

There are 12 sheets in PDB entry 8Z4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	68	70	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	40	43	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	142	first strand
Strand 2	A	222	227	anti-parallel
Strand 3	A	159	164	anti-parallel
Strand 4	A	180	188	anti-parallel
Strand 5	A	192	197	anti-parallel
Strand 6	A	201	207	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	68	70	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	40	43	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	142	first strand
Strand 2	B	222	227	anti-parallel
Strand 3	B	159	164	anti-parallel
Strand 4	B	180	188	anti-parallel
Strand 5	B	192	197	anti-parallel
Strand 6	B	201	207	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	68	70	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	40	43	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	142	first strand
Strand 2	C	222	227	anti-parallel
Strand 3	C	159	164	anti-parallel
Strand 4	C	180	188	anti-parallel
Strand 5	C	192	197	anti-parallel
Strand 6	C	201	207	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	68	70	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	40	43	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	142	first strand
Strand 2	D	222	227	anti-parallel
Strand 3	D	159	164	anti-parallel
Strand 4	D	180	188	anti-parallel
Strand 5	D	192	197	anti-parallel
Strand 6	D	201	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z4H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z4H