Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z4L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z4L entry

There are 14 chains in PDB entry 8Z4L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 200
B	ALA 2	LYS 200
C	ALA 2	LYS 200
D	ALA 2	LYS 200
E	ALA 2	LYS 200
F	LYS 3	ASP 196
G	MET 1	LEU 239
H	MET 1	LEU 609
I	VAL 435	LEU 609
J	ALA 2	LYS 200
K	THR 139	LEU 609
L	LYS 434	LEU 609
M	G -9	U 40
N	C -16	C 37

There are 83 helices in PDB entry 8Z4L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	85	90	Right-handed alpha
Helix 3	AA3	A	155	172	Right-handed alpha
Helix 4	AA4	B	24	30	Right-handed alpha
Helix 5	AA5	B	51	62	Right-handed alpha
Helix 6	AA6	B	63	65	Right-handed 310
Helix 7	AA7	B	84	90	Right-handed alpha
Helix 8	AA8	B	109	113	Right-handed alpha
Helix 9	AA9	B	156	172	Right-handed alpha
Helix 10	AB1	C	24	32	Right-handed alpha
Helix 11	AB2	C	53	67	Right-handed alpha
Helix 12	AB3	C	84	90	Right-handed alpha
Helix 13	AB4	C	109	113	Right-handed alpha
Helix 14	AB5	C	157	172	Right-handed alpha
Helix 15	AB6	C	176	180	Right-handed 310
Helix 16	AB7	D	24	33	Right-handed alpha
Helix 17	AB8	D	51	67	Right-handed alpha
Helix 18	AB9	D	84	91	Right-handed alpha
Helix 19	AC1	D	109	113	Right-handed alpha
Helix 20	AC2	D	156	172	Right-handed alpha
Helix 21	AC3	D	196	198	Right-handed 310
Helix 22	AC4	E	24	32	Right-handed alpha
Helix 23	AC5	E	51	67	Right-handed alpha
Helix 24	AC6	E	84	91	Right-handed alpha
Helix 25	AC7	E	109	113	Right-handed alpha
Helix 26	AC8	E	156	171	Right-handed alpha
Helix 27	AC9	E	176	180	Right-handed 310
Helix 28	AD1	F	24	32	Right-handed alpha
Helix 29	AD2	F	51	67	Right-handed alpha
Helix 30	AD3	F	84	90	Right-handed alpha
Helix 31	AD4	F	109	113	Right-handed alpha
Helix 32	AD5	F	157	172	Right-handed alpha
Helix 33	AD6	G	28	43	Right-handed alpha
Helix 34	AD7	G	46	52	Right-handed alpha
Helix 35	AD8	G	93	95	Right-handed 310
Helix 36	AD9	G	124	141	Right-handed alpha
Helix 37	AE1	H	42	51	Right-handed alpha
Helix 38	AE2	H	64	69	Right-handed alpha
Helix 39	AE3	H	70	77	Right-handed alpha
Helix 40	AE4	H	86	107	Right-handed alpha
Helix 41	AE5	H	114	122	Right-handed alpha
Helix 42	AE6	H	207	222	Right-handed alpha
Helix 43	AE7	H	233	243	Right-handed alpha
Helix 44	AE8	H	255	268	Right-handed alpha
Helix 45	AE9	H	269	272	Right-handed 310
Helix 46	AF1	H	274	278	Right-handed 310
Helix 47	AF2	H	295	305	Right-handed alpha
Helix 48	AF3	H	323	332	Right-handed alpha
Helix 49	AF4	H	348	355	Right-handed alpha
Helix 50	AF5	H	375	384	Right-handed alpha
Helix 51	AF6	H	399	412	Right-handed alpha
Helix 52	AF7	H	470	482	Right-handed alpha
Helix 53	AF8	H	509	523	Right-handed alpha
Helix 54	AF9	H	527	539	Right-handed alpha
Helix 55	AG1	H	542	554	Right-handed alpha
Helix 56	AG2	H	572	593	Right-handed alpha
Helix 57	AG3	H	594	604	Right-handed alpha
Helix 58	AG4	I	470	488	Right-handed alpha
Helix 59	AG5	I	509	523	Right-handed alpha
Helix 60	AG6	I	527	540	Right-handed alpha
Helix 61	AG7	I	541	554	Right-handed alpha
Helix 62	AG8	I	572	593	Right-handed alpha
Helix 63	AG9	I	594	604	Right-handed alpha
Helix 64	AH1	J	24	32	Right-handed alpha
Helix 65	AH2	J	51	67	Right-handed alpha
Helix 66	AH3	J	84	91	Right-handed alpha
Helix 67	AH4	J	109	113	Right-handed alpha
Helix 68	AH5	J	154	157	Right-handed 310
Helix 69	AH6	J	158	172	Right-handed alpha
Helix 70	AH7	K	378	386	Right-handed alpha
Helix 71	AH8	K	406	413	Right-handed alpha
Helix 72	AH9	K	470	487	Right-handed alpha
Helix 73	AI1	K	509	523	Right-handed alpha
Helix 74	AI2	K	527	540	Right-handed alpha
Helix 75	AI3	K	541	554	Right-handed alpha
Helix 76	AI4	K	572	592	Right-handed alpha
Helix 77	AI5	K	594	603	Right-handed alpha
Helix 78	AI6	L	470	488	Right-handed alpha
Helix 79	AI7	L	509	523	Right-handed alpha
Helix 80	AI8	L	527	540	Right-handed alpha
Helix 81	AI9	L	542	554	Right-handed alpha
Helix 82	AJ1	L	572	590	Right-handed alpha
Helix 83	AJ2	L	594	603	Right-handed alpha

There are 35 sheets in PDB entry 8Z4L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	144	150	anti-parallel
Strand 3	A	6	14	anti-parallel
Strand 4	A	184	189	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	104	105	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	46	49	anti-parallel
Strand 3	B	104	106	anti-parallel
Strand 4	B	143	151	anti-parallel
Strand 5	B	4	14	anti-parallel
Strand 6	B	184	188	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	143	151	anti-parallel
Strand 3	B	4	14	anti-parallel
Strand 4	B	191	194	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	122	first strand
Strand 2	B	129	138	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	104	106	anti-parallel
Strand 3	C	143	151	anti-parallel
Strand 4	C	99	101	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	104	106	anti-parallel
Strand 3	C	143	151	anti-parallel
Strand 4	C	4	14	anti-parallel
Strand 5	C	184	194	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	122	first strand
Strand 2	C	129	138	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	104	106	anti-parallel
Strand 3	D	143	151	anti-parallel
Strand 4	D	99	101	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	104	106	anti-parallel
Strand 3	D	143	151	anti-parallel
Strand 4	D	4	14	anti-parallel
Strand 5	D	184	194	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	122	first strand
Strand 2	D	129	138	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	104	106	anti-parallel
Strand 3	E	143	151	anti-parallel
Strand 4	E	99	101	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	104	106	anti-parallel
Strand 3	E	143	151	anti-parallel
Strand 4	E	4	14	anti-parallel
Strand 5	E	184	194	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	122	first strand
Strand 2	E	129	138	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	143	150	anti-parallel
Strand 3	F	105	106	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	143	150	anti-parallel
Strand 3	F	5	14	anti-parallel
Strand 4	F	184	193	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	122	first strand
Strand 2	F	129	138	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	6	first strand
Strand 2	G	118	122	anti-parallel
Strand 3	G	60	61	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	10	first strand
Strand 2	G	155	157	anti-parallel
Strand 3	G	143	144	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	102	first strand
Strand 2	G	105	110	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	214	216	first strand
Strand 2	G	173	176	anti-parallel
Strand 3	G	236	237	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	190	first strand
Strand 2	G	205	206	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	14	19	anti-parallel
Strand 3	H	24	30	anti-parallel
Strand 4	H	55	59	parallel
Strand 5	H	80	85	parallel
Strand 6	H	125	127	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	145	first strand
Strand 2	H	153	158	anti-parallel
Strand 3	H	163	168	anti-parallel
Strand 4	H	191	194	parallel
Strand 5	H	392	395	parallel
Strand 6	H	416	417	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	225	228	first strand
Strand 2	H	310	313	parallel
Strand 3	H	251	254	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	337	340	first strand
Strand 2	H	363	366	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	434	436	first strand
Strand 2	H	465	467	parallel
Strand 3	H	451	462	anti-parallel
Strand 4	H	445	446	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	434	436	first strand
Strand 2	H	465	467	parallel
Strand 3	H	451	462	anti-parallel
Strand 4	K	451	461	anti-parallel
Strand 5	K	465	469	anti-parallel
Strand 6	K	435	438	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	445	447	first strand
Strand 2	I	450	454	anti-parallel
Strand 3	L	458	460	anti-parallel
Strand 4	L	467	469	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	467	469	first strand
Strand 2	I	457	460	anti-parallel
Strand 3	L	454	455	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	104	106	anti-parallel
Strand 3	J	143	151	anti-parallel
Strand 4	J	99	101	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	104	106	anti-parallel
Strand 3	J	143	151	anti-parallel
Strand 4	J	4	14	anti-parallel
Strand 5	J	184	194	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	122	first strand
Strand 2	J	129	138	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	158	159	first strand
Strand 2	K	162	166	anti-parallel
Strand 3	K	191	193	parallel
Strand 4	K	392	394	parallel
Strand 5	K	416	418	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	445	447	first strand
Strand 2	L	450	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z4L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z4L