Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z5D entry

There are 4 chains in PDB entry 8Z5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 412
B
 MET 1ALA 412
C
 SER -4ASN 75
D
 SER -4ASN 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8Z5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 28Right-handed alpha
Helix 2
AA2
A
56 60Right-handed 310
Helix 3
AA3
A
62 69Right-handed 310
Helix 4
AA4
A
70 88Right-handed alpha
Helix 5
AA5
A
100 102Right-handed 310
Helix 6
AA6
A
114 129Right-handed alpha
Helix 7
AA7
A
130 133Right-handed 310
Helix 8
AA8
A
136 142Right-handed alpha
Helix 9
AA9
A
144 155Right-handed alpha
Helix 10
AB1
A
165 167Right-handed 310
Helix 11
AB2
A
168 183Right-handed alpha
Helix 12
AB3
A
199 209Right-handed alpha
Helix 13
AB4
A
218 222Right-handed 310
Helix 14
AB5
A
247 254Right-handed alpha
Helix 15
AB6
A
277 279Right-handed 310
Helix 16
AB7
A
280 295Right-handed alpha
Helix 17
AB8
A
308 324Right-handed alpha
Helix 18
AB9
A
335 340Right-handed alpha
Helix 19
AC1
A
342 344Right-handed 310
Helix 20
AC2
A
345 361Right-handed alpha
Helix 21
AC3
B
18 28Right-handed alpha
Helix 22
AC4
B
56 60Right-handed 310
Helix 23
AC5
B
62 67Right-handed alpha
Helix 24
AC6
B
70 87Right-handed alpha
Helix 25
AC7
B
97 102Right-handed alpha
Helix 26
AC8
B
114 129Right-handed alpha
Helix 27
AC9
B
130 133Right-handed 310
Helix 28
AD1
B
136 142Right-handed alpha
Helix 29
AD2
B
144 155Right-handed alpha
Helix 30
AD3
B
165 167Right-handed 310
Helix 31
AD4
B
168 183Right-handed alpha
Helix 32
AD5
B
199 208Right-handed alpha
Helix 33
AD6
B
218 223Right-handed alpha
Helix 34
AD7
B
247 253Right-handed alpha
Helix 35
AD8
B
277 279Right-handed 310
Helix 36
AD9
B
280 295Right-handed alpha
Helix 37
AE1
B
308 324Right-handed alpha
Helix 38
AE2
B
325 329Right-handed 310
Helix 39
AE3
B
335 340Right-handed alpha
Helix 40
AE4
B
342 344Right-handed 310
Helix 41
AE5
B
345 361Right-handed alpha
Helix 42
AE6
C
-3 16Right-handed alpha
Helix 43
AE7
C
27 32Right-handed alpha
Helix 44
AE8
C
35 50Right-handed alpha
Helix 45
AE9
C
55 61Right-handed alpha
Helix 46
AF1
C
64 75Right-handed alpha
Helix 47
AF2
D
-3 15Right-handed alpha
Helix 48
AF3
D
27 32Right-handed alpha
Helix 49
AF4
D
35 50Right-handed alpha
Helix 50
AF5
D
55 61Right-handed alpha
Helix 51
AF6
D
64 75Right-handed alpha
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There are 6 sheets in PDB entry 8Z5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
104 109parallel
Strand 3
A
188 195parallel
Strand 4
A
238 246anti-parallel
Strand 5
A
4 13anti-parallel
Strand 6
A
259 268anti-parallel
Strand 7
A
403 410anti-parallel
Strand 8
A
392 399anti-parallel
Strand 9
A
300 302parallel
Strand 10
A
332 333parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
48 49anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
386 387anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
104 109parallel
Strand 3
B
188 195parallel
Strand 4
B
238 246anti-parallel
Strand 5
B
4 12anti-parallel
Strand 6
B
259 268anti-parallel
Strand 7
B
403 410anti-parallel
Strand 8
B
392 399anti-parallel
Strand 9
B
300 302parallel
Strand 10
B
332 333parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
48 49anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 363first strand
Strand 2
B
386 387anti-parallel
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