Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z5E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z5E entry

There are 6 chains in PDB entry 8Z5E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 412
B	MET 1	ALA 412
C	MET -3	ASN 75
D	MET 1	ALA 412
E	SER 0	ALA 412
F	SER -4	ASN 75

There are 90 helices in PDB entry 8Z5E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	28	Right-handed alpha
Helix 2	AA2	A	56	60	Right-handed 310
Helix 3	AA3	A	62	69	Right-handed 310
Helix 4	AA4	A	70	88	Right-handed alpha
Helix 5	AA5	A	100	102	Right-handed 310
Helix 6	AA6	A	114	129	Right-handed alpha
Helix 7	AA7	A	130	133	Right-handed 310
Helix 8	AA8	A	136	142	Right-handed alpha
Helix 9	AA9	A	144	155	Right-handed alpha
Helix 10	AB1	A	165	167	Right-handed 310
Helix 11	AB2	A	168	183	Right-handed alpha
Helix 12	AB3	A	199	209	Right-handed alpha
Helix 13	AB4	A	218	222	Right-handed 310
Helix 14	AB5	A	247	254	Right-handed alpha
Helix 15	AB6	A	277	279	Right-handed 310
Helix 16	AB7	A	280	295	Right-handed alpha
Helix 17	AB8	A	308	324	Right-handed alpha
Helix 18	AB9	A	335	340	Right-handed alpha
Helix 19	AC1	A	342	344	Right-handed 310
Helix 20	AC2	A	345	361	Right-handed alpha
Helix 21	AC3	B	18	28	Right-handed alpha
Helix 22	AC4	B	56	60	Right-handed 310
Helix 23	AC5	B	62	67	Right-handed alpha
Helix 24	AC6	B	70	87	Right-handed alpha
Helix 25	AC7	B	97	102	Right-handed alpha
Helix 26	AC8	B	114	129	Right-handed alpha
Helix 27	AC9	B	130	133	Right-handed 310
Helix 28	AD1	B	136	142	Right-handed alpha
Helix 29	AD2	B	144	155	Right-handed alpha
Helix 30	AD3	B	165	167	Right-handed 310
Helix 31	AD4	B	168	183	Right-handed alpha
Helix 32	AD5	B	199	208	Right-handed alpha
Helix 33	AD6	B	247	253	Right-handed alpha
Helix 34	AD7	B	277	279	Right-handed 310
Helix 35	AD8	B	280	295	Right-handed alpha
Helix 36	AD9	B	308	323	Right-handed alpha
Helix 37	AE1	B	325	329	Right-handed 310
Helix 38	AE2	B	335	340	Right-handed alpha
Helix 39	AE3	B	342	344	Right-handed 310
Helix 40	AE4	B	345	361	Right-handed alpha
Helix 41	AE5	C	-2	16	Right-handed alpha
Helix 42	AE6	C	27	32	Right-handed alpha
Helix 43	AE7	C	35	50	Right-handed alpha
Helix 44	AE8	C	55	61	Right-handed alpha
Helix 45	AE9	C	64	75	Right-handed alpha
Helix 46	AF1	D	18	28	Right-handed alpha
Helix 47	AF2	D	56	60	Right-handed 310
Helix 48	AF3	D	62	69	Right-handed 310
Helix 49	AF4	D	70	88	Right-handed alpha
Helix 50	AF5	D	100	102	Right-handed 310
Helix 51	AF6	D	114	129	Right-handed alpha
Helix 52	AF7	D	130	133	Right-handed 310
Helix 53	AF8	D	136	142	Right-handed alpha
Helix 54	AF9	D	144	155	Right-handed alpha
Helix 55	AG1	D	165	167	Right-handed 310
Helix 56	AG2	D	168	183	Right-handed alpha
Helix 57	AG3	D	199	209	Right-handed alpha
Helix 58	AG4	D	218	222	Right-handed 310
Helix 59	AG5	D	247	254	Right-handed alpha
Helix 60	AG6	D	277	279	Right-handed 310
Helix 61	AG7	D	280	295	Right-handed alpha
Helix 62	AG8	D	308	324	Right-handed alpha
Helix 63	AG9	D	335	340	Right-handed alpha
Helix 64	AH1	D	342	344	Right-handed 310
Helix 65	AH2	D	345	361	Right-handed alpha
Helix 66	AH3	E	18	28	Right-handed alpha
Helix 67	AH4	E	56	60	Right-handed 310
Helix 68	AH5	E	62	67	Right-handed alpha
Helix 69	AH6	E	70	87	Right-handed alpha
Helix 70	AH7	E	97	102	Right-handed alpha
Helix 71	AH8	E	114	129	Right-handed alpha
Helix 72	AH9	E	130	133	Right-handed 310
Helix 73	AI1	E	136	142	Right-handed alpha
Helix 74	AI2	E	144	155	Right-handed alpha
Helix 75	AI3	E	165	167	Right-handed 310
Helix 76	AI4	E	168	183	Right-handed alpha
Helix 77	AI5	E	199	208	Right-handed alpha
Helix 78	AI6	E	247	253	Right-handed alpha
Helix 79	AI7	E	277	279	Right-handed 310
Helix 80	AI8	E	280	295	Right-handed alpha
Helix 81	AI9	E	308	324	Right-handed alpha
Helix 82	AJ1	E	325	329	Right-handed 310
Helix 83	AJ2	E	335	340	Right-handed alpha
Helix 84	AJ3	E	342	344	Right-handed 310
Helix 85	AJ4	E	345	361	Right-handed alpha
Helix 86	AJ5	F	-3	16	Right-handed alpha
Helix 87	AJ6	F	27	32	Right-handed alpha
Helix 88	AJ7	F	35	50	Right-handed alpha
Helix 89	AJ8	F	55	61	Right-handed alpha
Helix 90	AJ9	F	65	75	Right-handed alpha

There are 12 sheets in PDB entry 8Z5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	104	109	parallel
Strand 3	A	188	195	parallel
Strand 4	A	238	246	anti-parallel
Strand 5	A	4	13	anti-parallel
Strand 6	A	259	268	anti-parallel
Strand 7	A	403	410	anti-parallel
Strand 8	A	392	399	anti-parallel
Strand 9	A	300	302	parallel
Strand 10	A	332	333	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	48	49	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	386	387	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	104	109	parallel
Strand 3	B	188	195	parallel
Strand 4	B	238	246	anti-parallel
Strand 5	B	4	12	anti-parallel
Strand 6	B	259	268	anti-parallel
Strand 7	B	403	410	anti-parallel
Strand 8	B	392	399	anti-parallel
Strand 9	B	300	302	parallel
Strand 10	B	332	333	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	48	49	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	386	387	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	163	first strand
Strand 2	D	104	109	parallel
Strand 3	D	188	195	parallel
Strand 4	D	238	246	anti-parallel
Strand 5	D	4	12	anti-parallel
Strand 6	D	259	268	anti-parallel
Strand 7	D	403	410	anti-parallel
Strand 8	D	392	399	anti-parallel
Strand 9	D	300	302	parallel
Strand 10	D	332	333	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	48	49	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	363	first strand
Strand 2	D	386	387	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	163	first strand
Strand 2	E	104	109	parallel
Strand 3	E	188	195	parallel
Strand 4	E	238	246	anti-parallel
Strand 5	E	4	12	anti-parallel
Strand 6	E	259	268	anti-parallel
Strand 7	E	403	410	anti-parallel
Strand 8	E	392	399	anti-parallel
Strand 9	E	300	302	parallel
Strand 10	E	332	333	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	48	49	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	362	363	first strand
Strand 2	E	386	387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z5E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z5E