Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z5M entry

There are 3 chains in PDB entry 8Z5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLN 1223
C
 SER 10GLU 385
D
 GLN 4THR 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8Z5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
44 50Right-handed alpha
Helix 4
AA4
A
51 65Right-handed alpha
Helix 5
AA5
A
67 94Right-handed alpha
Helix 6
AA6
A
95 104Right-handed alpha
Helix 7
AA7
A
134 152Right-handed alpha
Helix 8
AA8
A
159 173Right-handed alpha
Helix 9
AA9
A
174 178Right-handed 310
Helix 10
AB1
A
198 212Right-handed alpha
Helix 11
AB2
A
218 222Right-handed 310
Helix 12
AB3
A
232 245Right-handed alpha
Helix 13
AB4
A
258 263Right-handed alpha
Helix 14
AB5
A
272 288Right-handed alpha
Helix 15
AB6
A
329 342Right-handed alpha
Helix 16
AB7
A
345 358Right-handed alpha
Helix 17
AB8
A
380 386Right-handed alpha
Helix 18
AB9
A
400 416Right-handed alpha
Helix 19
AC1
A
419 424Right-handed alpha
Helix 20
AC2
A
448 458Right-handed alpha
Helix 21
AC3
A
475 483Right-handed alpha
Helix 22
AC4
A
484 486Right-handed 310
Helix 23
AC5
A
503 508Right-handed alpha
Helix 24
AC6
A
522 526Right-handed 310
Helix 25
AC7
A
531 534Right-handed 310
Helix 26
AC8
A
535 553Right-handed alpha
Helix 27
AC9
A
567 571Right-handed 310
Helix 28
AD1
A
579 590Right-handed alpha
Helix 29
AD2
A
591 593Right-handed 310
Helix 30
AD3
A
603 610Right-handed alpha
Helix 31
AD4
A
763 773Right-handed alpha
Helix 32
AD5
A
775 790Right-handed alpha
Helix 33
AD6
A
805 821Right-handed alpha
Helix 34
AD7
A
825 834Right-handed alpha
Helix 35
AD8
A
839 850Right-handed alpha
Helix 36
AD9
A
872 885Right-handed alpha
Helix 37
AE1
A
888 908Right-handed alpha
Helix 38
AE2
A
919 936Right-handed alpha
Helix 39
AE3
A
938 948Right-handed alpha
Helix 40
AE4
A
950 964Right-handed alpha
Helix 41
AE5
A
1053 1065Right-handed alpha
Helix 42
AE6
A
1070 1080Right-handed alpha
Helix 43
AE7
A
1095 1100Right-handed alpha
Helix 44
AE8
A
1104 1116Right-handed alpha
Helix 45
AE9
A
1120 1141Right-handed alpha
Helix 46
AF1
A
1151 1170Right-handed alpha
Helix 47
AF2
A
1185 1191Right-handed alpha
Helix 48
AF3
A
1198 1214Right-handed alpha
Helix 49
AF4
C
12 19Right-handed alpha
Helix 50
AF5
C
54 58Right-handed 310
Helix 51
AF6
C
60 82Right-handed alpha
Helix 52
AF7
C
111 120Right-handed alpha
Helix 53
AF8
C
123 144Right-handed alpha
Helix 54
AF9
C
152 154Right-handed 310
Helix 55
AG1
C
187 191Right-handed 310
Helix 56
AG2
C
192 201Right-handed alpha
Helix 57
AG3
C
208 212Right-handed 310
Helix 58
AG4
C
213 226Right-handed alpha
Helix 59
AG5
C
234 245Right-handed alpha
Helix 60
AG6
C
258 269Right-handed alpha
Helix 61
AG7
C
278 284Right-handed alpha
Helix 62
AG8
C
285 289Right-handed 310
Helix 63
AG9
C
300 324Right-handed alpha
Helix 64
AH1
C
329 336Right-handed alpha
Helix 65
AH2
C
340 355Right-handed alpha
Helix 66
AH3
C
366 370Right-handed 310
Helix 67
AH4
C
377 382Right-handed 310
Helix 68
AH5
D
6 21Right-handed alpha
Helix 69
AH6
D
29 41Right-handed alpha
Helix 70
AH7
D
45 57Right-handed alpha
Helix 71
AH8
D
65 74Right-handed alpha
Helix 72
AH9
D
79 94Right-handed alpha
Helix 73
AI1
D
102 114Right-handed alpha
Helix 74
AI2
D
118 130Right-handed alpha
Helix 75
AI3
D
138 146Right-handed alpha
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There are 11 sheets in PDB entry 8Z5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
115 116anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
367 368anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 374first strand
Strand 2
A
393 395anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 563first strand
Strand 2
A
440 443parallel
Strand 3
A
599 601parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
A
463 464parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 474first strand
Strand 2
A
517 520parallel
Strand 3
A
510 512anti-parallel
Strand 4
A
613 615parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 489first strand
Strand 2
A
494 495anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1093first strand
Strand 2
A
1084 1087anti-parallel
Strand 3
A
1148 1150parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 28first strand
Strand 2
C
32 39anti-parallel
Strand 3
C
45 52anti-parallel
Strand 4
C
99 105anti-parallel
Strand 5
C
90 95anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 147first strand
Strand 2
C
173 174anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 158first strand
Strand 2
C
164 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il